Genetic variation, not cell type of origin, underlies the majority of identifiable regulatory differences in iPSCs

CK Burrows, NE Banovich, BJ Pavlovic… - PLoS …, 2016 - journals.plos.org
The advent of induced pluripotent stem cells (iPSCs) revolutionized human genetics by
allowing us to generate pluripotent cells from easily accessible somatic tissues. This …

Genetic background drives transcriptional variation in human induced pluripotent stem cells

F Rouhani, N Kumasaka, MC de Brito, A Bradley… - PLoS …, 2014 - journals.plos.org
Human iPS cells have been generated using a diverse range of tissues from a variety of
donors using different reprogramming vectors. However, these cell lines are heterogeneous …

DNA methylation dynamics in human induced pluripotent stem cells over time

K Nishino, M Toyoda, M Yamazaki-Inoue… - PLoS …, 2011 - journals.plos.org
Epigenetic reprogramming is a critical event in the generation of induced pluripotent stem
cells (iPSCs). Here, we determined the DNA methylation profiles of 22 human iPSC lines …

Genetic and epigenetic variations in iPSCs: potential causes and implications for application

G Liang, Y Zhang - Cell stem cell, 2013 - cell.com
The ability to reprogram somatic cells to induced pluripotent stem cells (iPSCs) has
revolutionized the field of regenerative medicine. However, recent studies on the genetic …

[HTML][HTML] Hotspots of de novo point mutations in induced pluripotent stem cells

M Yoshihara, R Araki, Y Kasama, M Sunayama, M Abe… - Cell reports, 2017 - cell.com
Induced pluripotent stem cells (iPSCs) are generated by direct reprogramming of somatic
cells and hold great promise for novel therapies. However, several studies have reported …

Recurrent variations in DNA methylation in human pluripotent stem cells and their differentiated derivatives

KL Nazor, G Altun, C Lynch, H Tran, JV Harness… - Cell stem cell, 2012 - cell.com
Human pluripotent stem cells (hPSCs) are potential sources of cells for modeling disease
and development, drug discovery, and regenerative medicine. However, it is important to …

Imprinting fidelity in mouse iPSCs depends on sex of donor cell and medium formulation

M Arez, M Eckersley-Maslin, T Klobučar… - Nature …, 2022 - nature.com
Reprogramming of somatic cells into induced Pluripotent Stem Cells (iPSCs) is a major leap
towards personalised approaches to disease modelling and cell-replacement therapies …

Impact of regulatory variation across human iPSCs and differentiated cells

NE Banovich, YI Li, A Raj, MC Ward… - Genome …, 2018 - genome.cshlp.org
Induced pluripotent stem cells (iPSCs) are an essential tool for studying cellular
differentiation and cell types that are otherwise difficult to access. We investigated the use of …

Analysis of transcriptional variability in a large human iPSC library reveals genetic and non-genetic determinants of heterogeneity

I Carcamo-Orive, GE Hoffman, P Cundiff… - Cell stem cell, 2017 - cell.com
Variability in induced pluripotent stem cell (iPSC) lines remains a concern for disease
modeling and regenerative medicine. We have used RNA-sequencing analysis and linear …

Aberrant DNA methylation in human iPSCs associates with MYC-binding motifs in a clone-specific manner independent of genetics

AD Panopoulos, EN Smith, AD Arias, PJ Shepard… - Cell Stem Cell, 2017 - cell.com
Induced pluripotent stem cells (iPSCs) show variable methylation patterns between lines,
some of which reflect aberrant differences relative to embryonic stem cells (ESCs). To …