Standardized nuclear markers improve and homogenize species delimitation in Metazoa

L Dietz, J Eberle, C Mayer, S Kukowka… - Methods in Ecology …, 2023 - Wiley Online Library
Species are the fundamental units of life and evolution. Their recognition is essential for
science and society. Molecular methods have been increasingly used for the identification of …

Delineating species in the speciation continuum: A proposal

N Galtier - Evolutionary applications, 2019 - Wiley Online Library
Delineating species is a difficult and seemingly uninteresting issue that is still essential to
address. Taxonomic methodology is heterogeneous according to the taxa and scientists …

One, two or more species? Mitonuclear discordance and species delimitation

L Després - 2019 - Wiley Online Library
Delimiting species boundaries is central to understand ecological and evolutionary
processes, and to monitor biodiversity patterns over time and space. Yet, most of our current …

Determining species boundaries in a world full of rarity: singletons, species delimitation methods

GS Lim, M Balke, R Meier - Systematic biology, 2012 - academic.oup.com
Singletons—species only known from a single specimen—and uniques—species that have
only been collected once—are very common in biodiversity samples. Recent reviews …

Bayesian species delimitation combining multiple genes and traits in a unified framework

C Solís-Lemus, LL Knowles, C Ané - Evolution, 2015 - academic.oup.com
Delimitation of species based exclusively on genetic data has been advocated despite a
critical knowledge gap: how might such approaches fail because they rely on genetic data …

Bayesian species identification under the multispecies coalescent provides significant improvements to DNA barcoding analyses

Z Yang, B Rannala - Molecular Ecology, 2017 - Wiley Online Library
DNA barcoding methods use a single locus (usually the mitochondrial COI gene) to assign
unidentified specimens to known species in a library based on a genetic distance threshold …

Multiplex sequencing of pooled mitochondrial genomes—a crucial step toward biodiversity analysis using mito-metagenomics

M Tang, M Tan, G Meng, S Yang, XU Su… - Nucleic acids …, 2014 - academic.oup.com
The advent in high-throughput-sequencing (HTS) technologies has revolutionized
conventional biodiversity research by enabling parallel capture of DNA sequences …

More taxonomy, not DNA barcoding

MC Ebach, C Holdrege - BioScience, 2005 - academic.oup.com
MALTE C. EBACH AND CRAIG HOLDREGE ecologist and environmental consultant more
easily than we can imagine its value to taxonomy. Barcoding could indeed be valuable in …

Species delimitation: inferring gaps in morphology across geography

F Zapata, I Jiménez - Systematic biology, 2012 - academic.oup.com
Species are commonly delimited on the basis of gaps in patterns of morphological variation,
but there seems to be little recent work on methods to objectively assess such gaps. Here …

A plea for DNA taxonomy

D Tautz, P Arctander, A Minelli, RH Thomas… - Trends in ecology & …, 2003 - cell.com
Taxonomy underpins all biological research, with implications for many basic scientific and
applied fields. Insights into the stability or change of animal and plant guilds require species …