MycoCosm portal: gearing up for 1000 fungal genomes
IV Grigoriev, R Nikitin, S Haridas, A Kuo… - Nucleic acids …, 2014 - academic.oup.com
MycoCosm is a fungal genomics portal (http://jgi. doe. gov/fungi), developed by the US
Department of Energy Joint Genome Institute to support integration, analysis and …
Department of Energy Joint Genome Institute to support integration, analysis and …
Quantifying microbial communities with 454 pyrosequencing: does read abundance count?
Pyrosequencing technologies have revolutionized how we describe and compare complex
microbial communities. In 454 pyrosequencing data sets, the abundance of reads pertaining …
microbial communities. In 454 pyrosequencing data sets, the abundance of reads pertaining …
Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyperdiverse fungal communities
Next-generation amplicon sequencing is a powerful tool in ecological studies of fungi.
Technological development suggests that short fragment high-throughput techniques, eg …
Technological development suggests that short fragment high-throughput techniques, eg …
Fungal species concepts in the genomics era
J Xu - Genome, 2020 - cdnsciencepub.com
The 140 000 or so fungal species reported so far are heterogeneously defined based on
varying criteria such as morphological, physiological, mating, and (or) molecular features …
varying criteria such as morphological, physiological, mating, and (or) molecular features …
[HTML][HTML] Molecular markers: An overview of data published for fungi over the last ten years
M Oliveira, L Azevedo - Journal of Fungi, 2022 - mdpi.com
Fungi are amongst the most abundant and diverse organisms. Despite being widely known
for their adverse role in food spoilage or as pathogens for humans, animals, or plants, they …
for their adverse role in food spoilage or as pathogens for humans, animals, or plants, they …
Diversity and ecology of soil fungal communities: increased understanding through the application of molecular techniques
IC Anderson, JWG Cairney - Environmental microbiology, 2004 - Wiley Online Library
Fungi fulfil a range of important ecological functions, yet current understanding of fungal
biodiversity in soil is limited. Direct DNA extraction from soil, coupled with polymerase chain …
biodiversity in soil is limited. Direct DNA extraction from soil, coupled with polymerase chain …
High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats
Understanding the structure, functions, activities and dynamics of microbial communities in
natural environments is one of the grand challenges of 21st century science. To address this …
natural environments is one of the grand challenges of 21st century science. To address this …
Mycobiome: approaches to analysis of intestinal fungi
Massively parallel sequencing (MPSS) of bacterial 16S rDNA has been widely used to
characterize the microbial makeup of the human and mouse gastrointestinal tract. However …
characterize the microbial makeup of the human and mouse gastrointestinal tract. However …
Detection and diversity of fungi from environmental samples: traditional versus molecular approaches
R. Jeewon and KD Hyde 2 these fungi with plant roots and other biotic or abiotic factors
within the soil constitutes a challenge to soil microbiologists. Obviously there must have …
within the soil constitutes a challenge to soil microbiologists. Obviously there must have …
More bang for the buck? Can arbuscular mycorrhizal fungal communities be characterized adequately alongside other fungi using general fungal primers?
Background High throughput sequencing has revolutionized microbial ecology. We now
have the ability to characterize both prokaryotic and eukaryotic microbial communities more …
have the ability to characterize both prokaryotic and eukaryotic microbial communities more …