[HTML][HTML] Critical issues in mycobiota analysis
B Halwachs, N Madhusudhan, R Krause… - Frontiers in …, 2017 - frontiersin.org
Fungi constitute an important part of the human microbiota and they play a significant role for
health and disease development. Advancements made in the culture-independent analysis …
health and disease development. Advancements made in the culture-independent analysis …
[HTML][HTML] CloVR-ITS: automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota
Background Besides the development of comprehensive tools for high-throughput 16S
ribosomal RNA amplicon sequence analysis, there exists a growing need for protocols …
ribosomal RNA amplicon sequence analysis, there exists a growing need for protocols …
Fungal identification biases in microbiome projects
L Tedersoo, B Lindahl - Environmental microbiology reports, 2016 - Wiley Online Library
Fungi are the key players in ecosystems as well as in plant and human health. High‐
throughput molecular identification of fungi has greatly progressed our understanding about …
throughput molecular identification of fungi has greatly progressed our understanding about …
[HTML][HTML] HumanMycobiomeScan: a new bioinformatics tool for the characterization of the fungal fraction in metagenomic samples
Background Modern metagenomic analysis of complex microbial communities produces
large amounts of sequence data containing information on the microbiome in terms of …
large amounts of sequence data containing information on the microbiome in terms of …
[HTML][HTML] MICCA: a complete and accurate software for taxonomic profiling of metagenomic data
The introduction of high throughput sequencing technologies has triggered an increase of
the number of studies in which the microbiota of environmental and human samples is …
the number of studies in which the microbiota of environmental and human samples is …
Novel ITS1 fungal primers for characterization of the mycobiome
Studies of the human microbiome frequently omit characterization of fungal communities
(the mycobiome), which limits our ability to investigate how fungal communities influence …
(the mycobiome), which limits our ability to investigate how fungal communities influence …
Mycobiome: approaches to analysis of intestinal fungi
Massively parallel sequencing (MPSS) of bacterial 16S rDNA has been widely used to
characterize the microbial makeup of the human and mouse gastrointestinal tract. However …
characterize the microbial makeup of the human and mouse gastrointestinal tract. However …
[HTML][HTML] CONSTAX: a tool for improved taxonomic resolution of environmental fungal ITS sequences
K Gdanetz, GMN Benucci, N Vande Pol, G Bonito - BMC bioinformatics, 2017 - Springer
Background One of the most crucial steps in high-throughput sequence-based microbiome
studies is the taxonomic assignment of sequences belonging to operational taxonomic units …
studies is the taxonomic assignment of sequences belonging to operational taxonomic units …
[HTML][HTML] Fungal ITS1 deep-sequencing strategies to reconstruct the composition of a 26-species community and evaluation of the gut mycobiota of healthy Japanese …
The study of mycobiota remains relatively unexplored due to the lack of sufficient available
reference strains and databases compared to those of bacterial microbiome studies. Deep …
reference strains and databases compared to those of bacterial microbiome studies. Deep …
Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …