The role of alternative splicing in cancer
The functional capacity of cells is defined by the transcriptome. Many recent studies have
identified variations in the transcriptome of tumors due to alternative splicing changes, as …
identified variations in the transcriptome of tumors due to alternative splicing changes, as …
Aberrant RNA splicing in cancer; expression changes and driver mutations of splicing factor genes
A Sveen, S Kilpinen, A Ruusulehto, RA Lothe… - Oncogene, 2016 - nature.com
Alternative splicing is a widespread process contributing to structural transcript variation and
proteome diversity. In cancer, the splicing process is commonly disrupted, resulting in both …
proteome diversity. In cancer, the splicing process is commonly disrupted, resulting in both …
Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer
M Oka, L Xu, T Suzuki, T Yoshikawa, H Sakamoto… - Genome biology, 2021 - Springer
Background Long-read sequencing of full-length cDNAs enables the detection of structures
of aberrant splicing isoforms in cancer cells. These isoforms are occasionally translated …
of aberrant splicing isoforms in cancer cells. These isoforms are occasionally translated …
Identification of alternative splicing events regulated by the oncogenic factor SRSF1 in lung cancer
Abnormal alternative splicing has been associated with cancer. Genome-wide microarrays
can be used to detect differential splicing events. In this study, we have developed …
can be used to detect differential splicing events. In this study, we have developed …
Pan-cancer analysis of clinical relevance of alternative splicing events in 31 human cancers
Alternative splicing represents a critical posttranscriptional regulation of gene expression,
which contributes to the protein complexity and mRNA processing. Defects of alternative …
which contributes to the protein complexity and mRNA processing. Defects of alternative …
Somatic mutational landscape of splicing factor genes and their functional consequences across 33 cancer types
M Seiler, S Peng, AA Agrawal, J Palacino, T Teng… - Cell reports, 2018 - cell.com
Hotspot mutations in splicing factor genes have been recently reported at high frequency in
hematological malignancies, suggesting the importance of RNA splicing in cancer. We …
hematological malignancies, suggesting the importance of RNA splicing in cancer. We …
A comprehensive characterization of cis-acting splicing-associated variants in human cancer
Y Shiraishi, K Kataoka, K Chiba, A Okada… - Genome …, 2018 - genome.cshlp.org
Although many driver mutations are thought to promote carcinogenesis via abnormal
splicing, the landscape of splicing-associated variants (SAVs) remains unknown due to the …
splicing, the landscape of splicing-associated variants (SAVs) remains unknown due to the …
Alternative splicing and cancer: insights, opportunities, and challenges from an expanding view of the transcriptome
S Cherry, KW Lynch - Genes & Development, 2020 - genesdev.cshlp.org
Over the past decade there has been increased awareness of the potential role of
alternative splicing in the etiology of cancer. In particular, advances in RNA-Sequencing …
alternative splicing in the etiology of cancer. In particular, advances in RNA-Sequencing …
Alternative splicing and tumor progression
C Ghigna, C Valacca, G Biamonti - Current genomics, 2008 - ingentaconnect.com
Alternative splicing is a key molecular mechanism for increasing the functional diversity of
the eukaryotic proteomes. A large body of experimental data implicates aberrant splicing in …
the eukaryotic proteomes. A large body of experimental data implicates aberrant splicing in …
Improved methods for RNAseq-based alternative splicing analysis
The robust detection of disease-associated splice events from RNAseq data is challenging
due to the potential confounding effect of gene expression levels and the often limited …
due to the potential confounding effect of gene expression levels and the often limited …