Tracking a tuberculosis outbreak over 21 years: strain-specific single-nucleotide polymorphism typing combined with targeted whole-genome sequencing

D Stucki, M Ballif, T Bodmer, M Coscolla… - The Journal of …, 2015 - academic.oup.com
Background. Whole-genome sequencing (WGS) is increasingly used in molecular-
epidemiological investigations of bacterial pathogens, despite cost-and time-intensive …

[HTML][HTML] Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular …

A Roetzer, R Diel, TA Kohl, C Rückert, U Nübel… - PLoS …, 2013 - journals.plos.org
Background Understanding Mycobacterium tuberculosis (Mtb) transmission is essential to
guide efficient tuberculosis control strategies. Traditional strain typing lacks sufficient …

Whole-genome sequencing to detect recent transmission of Mycobacterium tuberculosis in settings with a high burden of tuberculosis

T Luo, C Yang, Y Peng, L Lu, G Sun, J Wu, X Jin… - Tuberculosis, 2014 - Elsevier
Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been used to trace
the transmission of M. tuberculosis, the causative agent of tuberculosis (TB). Previously …

[HTML][HTML] Whole-genome sequencing for rapid, reliable and routine investigation of Mycobacterium tuberculosis transmission in local communities

F Zakham, S Laurent, ALE Carreira, A Corbaz… - New microbes and new …, 2019 - Elsevier
Contact investigations following the diagnosis of active tuberculosis (TB) are paramount for
the control of the disease. Epidemiological data are very powerful for contact tracing but …

Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach

TA Kohl, R Diel, D Harmsen, J Rothgänger… - Journal of clinical …, 2014 - Am Soc Microbiol
Whole-genome sequencing (WGS) allows for effective tracing of Mycobacterium
tuberculosis complex (MTBC)(tuberculosis pathogens) transmission. However, it is difficult to …

Within-host Mycobacterium tuberculosis diversity and its utility for inferences of transmission

MA Martin, RS Lee, LA Cowley… - Microbial …, 2018 - microbiologyresearch.org
Whole genome sequencing in conjunction with traditional epidemiology has been used to
reconstruct transmission networks of Mycobacterium tuberculosis during outbreaks. Given its …

[HTML][HTML] Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

TM Walker, CLC Ip, RH Harrell, JT Evans… - The Lancet infectious …, 2013 - thelancet.com
Background Tuberculosis incidence in the UK has risen in the past decade. Disease control
depends on epidemiological data, which can be difficult to obtain. Whole-genome …

Genomic Epidemiology of a Major Mycobacterium tuberculosis Outbreak: Retrospective Cohort Study in a Low-Incidence Setting Using Sparse Time-Series Sampling

DB Folkvardsen, A Norman… - The Journal of …, 2017 - academic.oup.com
Since 1992, Denmark has documented the largest outbreak of tuberculosis in Scandinavia
ascribed to a single genotype, termed C2/1112–15. As of spring 2017, the International …

[HTML][HTML] Contact investigations for outbreaks of Mycobacterium tuberculosis: advances through whole genome sequencing

TM Walker, P Monk, EG Smith, TEA Peto - Clinical Microbiology and …, 2013 - Elsevier
The control of tuberculosis depends on the identification and treatment of infectious patients
and their contacts, who are currently identified through a combined approach of genotyping …

Accuracy of whole-genome sequencing to determine recent tuberculosis transmission: an 11-year population-based study in Hamburg, Germany

R Diel, TA Kohl, FP Maurer, M Merker… - European …, 2019 - Eur Respiratory Soc
Controlling human-to-human tuberculosis (TB) transmission is key for achieving the targets
of the End TB Strategy set by the World Health Organization (WHO)[1, 2]. Stopping TB …