Tracking a tuberculosis outbreak over 21 years: strain-specific single-nucleotide polymorphism typing combined with targeted whole-genome sequencing
D Stucki, M Ballif, T Bodmer, M Coscolla… - The Journal of …, 2015 - academic.oup.com
Background. Whole-genome sequencing (WGS) is increasingly used in molecular-
epidemiological investigations of bacterial pathogens, despite cost-and time-intensive …
epidemiological investigations of bacterial pathogens, despite cost-and time-intensive …
[HTML][HTML] Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular …
Background Understanding Mycobacterium tuberculosis (Mtb) transmission is essential to
guide efficient tuberculosis control strategies. Traditional strain typing lacks sufficient …
guide efficient tuberculosis control strategies. Traditional strain typing lacks sufficient …
Whole-genome sequencing to detect recent transmission of Mycobacterium tuberculosis in settings with a high burden of tuberculosis
T Luo, C Yang, Y Peng, L Lu, G Sun, J Wu, X Jin… - Tuberculosis, 2014 - Elsevier
Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been used to trace
the transmission of M. tuberculosis, the causative agent of tuberculosis (TB). Previously …
the transmission of M. tuberculosis, the causative agent of tuberculosis (TB). Previously …
[HTML][HTML] Whole-genome sequencing for rapid, reliable and routine investigation of Mycobacterium tuberculosis transmission in local communities
F Zakham, S Laurent, ALE Carreira, A Corbaz… - New microbes and new …, 2019 - Elsevier
Contact investigations following the diagnosis of active tuberculosis (TB) are paramount for
the control of the disease. Epidemiological data are very powerful for contact tracing but …
the control of the disease. Epidemiological data are very powerful for contact tracing but …
Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach
TA Kohl, R Diel, D Harmsen, J Rothgänger… - Journal of clinical …, 2014 - Am Soc Microbiol
Whole-genome sequencing (WGS) allows for effective tracing of Mycobacterium
tuberculosis complex (MTBC)(tuberculosis pathogens) transmission. However, it is difficult to …
tuberculosis complex (MTBC)(tuberculosis pathogens) transmission. However, it is difficult to …
Within-host Mycobacterium tuberculosis diversity and its utility for inferences of transmission
Whole genome sequencing in conjunction with traditional epidemiology has been used to
reconstruct transmission networks of Mycobacterium tuberculosis during outbreaks. Given its …
reconstruct transmission networks of Mycobacterium tuberculosis during outbreaks. Given its …
[HTML][HTML] Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study
TM Walker, CLC Ip, RH Harrell, JT Evans… - The Lancet infectious …, 2013 - thelancet.com
Background Tuberculosis incidence in the UK has risen in the past decade. Disease control
depends on epidemiological data, which can be difficult to obtain. Whole-genome …
depends on epidemiological data, which can be difficult to obtain. Whole-genome …
Genomic Epidemiology of a Major Mycobacterium tuberculosis Outbreak: Retrospective Cohort Study in a Low-Incidence Setting Using Sparse Time-Series Sampling
DB Folkvardsen, A Norman… - The Journal of …, 2017 - academic.oup.com
Since 1992, Denmark has documented the largest outbreak of tuberculosis in Scandinavia
ascribed to a single genotype, termed C2/1112–15. As of spring 2017, the International …
ascribed to a single genotype, termed C2/1112–15. As of spring 2017, the International …
[HTML][HTML] Contact investigations for outbreaks of Mycobacterium tuberculosis: advances through whole genome sequencing
The control of tuberculosis depends on the identification and treatment of infectious patients
and their contacts, who are currently identified through a combined approach of genotyping …
and their contacts, who are currently identified through a combined approach of genotyping …
Accuracy of whole-genome sequencing to determine recent tuberculosis transmission: an 11-year population-based study in Hamburg, Germany
Controlling human-to-human tuberculosis (TB) transmission is key for achieving the targets
of the End TB Strategy set by the World Health Organization (WHO)[1, 2]. Stopping TB …
of the End TB Strategy set by the World Health Organization (WHO)[1, 2]. Stopping TB …