Use of Whole Genome Sequencing to Determine the Microevolution of Mycobacterium tuberculosis during an Outbreak
M Kato-Maeda, C Ho, B Passarelli, N Banaei… - PloS one, 2013 - journals.plos.org
Rationale Current tools available to study the molecular epidemiology of tuberculosis do not
provide information about the directionality and sequence of transmission for tuberculosis …
provide information about the directionality and sequence of transmission for tuberculosis …
Genomic Characterization of an Endemic Mycobacterium tuberculosis Strain: Evolutionary and Epidemiologic Implications
D Nguyen, P Brassard, D Menzies… - Journal of clinical …, 2004 - Am Soc Microbiol
In a study of 302 Mycobacterium tuberculosis clinical isolates from the low-incidence
Canadian-born population of Quebec, we characterized a large endemic strain family by …
Canadian-born population of Quebec, we characterized a large endemic strain family by …
Three-year population-based evaluation of standardized mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing of Mycobacterium …
C Allix-Béguec, M Fauville-Dufaux… - Journal of clinical …, 2008 - Am Soc Microbiol
Standardized mycobacterial interspersed repetitive-unit-variable-number tandem repeat
(MIRU-VNTR) typing based on 15 and 24 loci recently has been proposed for …
(MIRU-VNTR) typing based on 15 and 24 loci recently has been proposed for …
Epidemiological links between tuberculosis cases identified twice as efficiently by whole genome sequencing than conventional molecular typing: a population-based …
R Jajou, A Neeling, R Hunen, G Vries, H Schimmel… - PloS one, 2018 - journals.plos.org
Background Patients with Mycobacterium tuberculosis isolates sharing identical DNA
fingerprint patterns can be epidemiologically linked. However, municipal health services in …
fingerprint patterns can be epidemiologically linked. However, municipal health services in …
TB-Lineage: an online tool for classification and analysis of strains of Mycobacterium tuberculosis complex
This paper formulates a set of rules to classify genotypes of the Mycobacterium tuberculosis
complex (MTBC) into major lineages using spoligotypes and MIRU-VNTR results. The rules …
complex (MTBC) into major lineages using spoligotypes and MIRU-VNTR results. The rules …
Assessment of an optimized mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing system combined with spoligotyping for population …
MC Oelemann, R Diel, V Vatin, W Haas… - Journal of clinical …, 2007 - Am Soc Microbiol
An optimized set of 24 mycobacterial interspersed repetitive-unit-variable-number tandem-
repeat (MIRU-VNTR) loci, including a discriminatory subset of 15 loci, has recently been …
repeat (MIRU-VNTR) loci, including a discriminatory subset of 15 loci, has recently been …
Molecular epidemiology and transmission dynamics of Mycobacterium tuberculosis in Northwest Ethiopia: new phylogenetic lineages found in Northwest Ethiopia
B Tessema, J Beer, M Merker, F Emmrich, U Sack… - BMC infectious …, 2013 - Springer
Abstract Background Although Ethiopia ranks seventh among the world's 22 high-burden
tuberculosis (TB) countries, little is known about strain diversity and transmission. In this …
tuberculosis (TB) countries, little is known about strain diversity and transmission. In this …
Molecular epidemiology of tuberculosis in British Columbia, Canada: a 10-year retrospective study
JL Guthrie, C Kong, D Roth, D Jorgensen… - Clinical Infectious …, 2018 - academic.oup.com
Background Understanding regional molecular epidemiology allows for the development of
more efficient tuberculosis prevention strategies in low-incidence settings. Methods We …
more efficient tuberculosis prevention strategies in low-incidence settings. Methods We …
Discordance between Mycobacterial Interspersed Repetitive-Unit-Variable-Number Tandem-Repeat Typing and IS6110 Restriction Fragment Length Polymorphism Genotyping …
M Hanekom, GD Van Der Spuy… - Journal of clinical …, 2008 - Am Soc Microbiol
ABSTRACT IS 6110 restriction fragment length polymorphism (RFLP) genotyping is the most
widely used genotyping method to study the epidemiology of Mycobacterium tuberculosis …
widely used genotyping method to study the epidemiology of Mycobacterium tuberculosis …
Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study
TM Walker, CLC Ip, RH Harrell, JT Evans… - The Lancet infectious …, 2013 - thelancet.com
Background Tuberculosis incidence in the UK has risen in the past decade. Disease control
depends on epidemiological data, which can be difficult to obtain. Whole-genome …
depends on epidemiological data, which can be difficult to obtain. Whole-genome …