[HTML][HTML] Fast sequence-based microsatellite genotyping development workflow

O Lepais, E Chancerel, C Boury, F Salin, A Manicki… - PeerJ, 2020 - peerj.com
Application of high-throughput sequencing technologies to microsatellite genotyping
(SSRseq) has been shown to remove many of the limitations of electrophoresis-based …

Microsatellites and their application to population genetic studies

MW Bruford, RK Wayne - Current opinion in genetics & development, 1993 - Elsevier
Microsatellites may soon become the markers of choice for molecular population genetic
studies. However, our knowledge of these simple repetitive sequences and how they evolve …

Survey of simple sequence repeats in completed fungal genomes

H Karaoglu, CMY Lee, W Meyer - Molecular biology and …, 2005 - academic.oup.com
The use of simple sequence repeats or microsatellites as genetic markers has become very
popular because of their abundance and length variation between different individuals …

Variation of microsatellite size homoplasy across electromorphs, loci, and populations in three invertebrate species

F Viard, P Franck, MP Dubois, A Estoup… - Journal of molecular …, 1998 - Springer
Size homoplasy was analyzed at microsatellite loci by sequencing electromorphs, that is,
variants of the same size (base pairs). This study was conducted using five interrupted …

Genome size and microsatellites: the effect of nuclear size on amplification potential

TWJ Garner - Genome, 2002 - cdnsciencepub.com
Although the frequency of microsatellite DNA regions generally increases with increasing
genome size, genome size has a negative effect on polymerase chain reaction (PCR) …

[HTML][HTML] 32 species validation of a new Illumina paired-end approach for the development of microsatellites

SL Lance, CN Love, SO Nunziata, JR O'Bryhim… - PloS one, 2013 - journals.plos.org
Development and optimization of novel species-specific microsatellites, or simple sequence
repeats (SSRs) remains an important step for studies in ecology, evolution, and behavior …

Minisatellite origins in yeast and humans

JE Haber, EJ Louis - Genomics, 1998 - Elsevier
Variable numbers of tandem repeats are valuable markers in genetic studies. The arrays of
interest are simple microsatellites, containing repetitions of 1–5 nucleotides, and …

Microsatellite evolution: a battle between replication slippage and point mutation

H Ellegren - TRENDS in Genetics, 2002 - cell.com
Pick a eukaryotic genome and initiate shot-gun sequencing–you will not have to sequence
too many clones until you start seeing simple tandem repeat sequences, such as …

[HTML][HTML] Microsatellite interruptions stabilize primate genomes and exist as population-specific single nucleotide polymorphisms within individual human genomes

G Ananda, SE Hile, A Breski, Y Wang, Y Kelkar… - PLoS …, 2014 - journals.plos.org
Interruptions of microsatellite sequences impact genome evolution and can alter disease
manifestation. However, human polymorphism levels at interrupted microsatellites (iMSs) …

[HTML][HTML] Genome-wide detection of short tandem repeat expansions by long-read sequencing

Q Liu, Y Tong, K Wang - BMC bioinformatics, 2020 - Springer
Background Short tandem repeat (STR), or “microsatellite”, is a tract of DNA in which a
specific motif (typically< 10 base pairs) is repeated multiple times. STRs are abundant …