Core microbiota in the rhizosphere of heavy metal accumulators and its contribution to plant performance

J Luo, S Gu, X Guo, Y Liu, Q Tao, HP Zhao… - Environmental …, 2022 - ACS Publications
Persistent microbial symbioses can confer greater fitness to their host under unfavorable
conditions, but manipulating such beneficial interactions necessitates a mechanistic …

Life and death in the soil microbiome: how ecological processes influence biogeochemistry

NW Sokol, E Slessarev, GL Marschmann… - Nature Reviews …, 2022 - nature.com
Soil microorganisms shape global element cycles in life and death. Living soil
microorganisms are a major engine of terrestrial biogeochemistry, driving the turnover of soil …

Genomic features predict bacterial life history strategies in soil, as identified by metagenomic stable isotope probing

SE Barnett, R Egan, B Foster, EA Eloe-Fadrosh… - MBio, 2023 - Am Soc Microbiol
Bacteria catalyze the formation and destruction of soil organic matter, but the bacterial
dynamics in soil that govern carbon (C) cycling are not well understood. Life history …

Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity

JP Shaffer, LF Nothias, LR Thompson, JG Sanders… - Nature …, 2022 - nature.com
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …

Genomics and the geosciences

JF Banfield, CR Marshall - Science, 2000 - science.org
Genomics–the mapping and sequencing of genomes and analysis of gene and genome
function (1)–will revolutionize the biological and possibly the geological sciences. To date …

Heavy metal effects on multitrophic level microbial communities and insights for ecological restoration of an abandoned electroplating factory site

X Wang, Z Dai, H Zhao, L Hu, RA Dahlgren, J Xu - Environmental Pollution, 2023 - Elsevier
The response of soil microbes to heavy metal pollution provides a metric to evaluate the soil
health and ecological risks associated with heavy metal contamination. However, a …

Building microbial kinetic models for environmental application: a theoretical perspective

Q Jin - Applied Geochemistry, 2023 - Elsevier
Kinetic modeling of microbial reactions is a common tool for addressing the central
environmental questions of our time, from contaminant remediation to the global carbon …

[PDF][PDF] Need for laboratory ecosystems to unravel the structures and functions of soil microbial communities mediated by chemistry. mBio 9: e01175-18

K Zhalnina, K Zengler, D Newman, TR Northen - DOI, 2018 - core.ac.uk
The chemistry underpinning microbial interactions provides an integrative framework for
linking the activities of individual microbes, microbial communities, plants, and their …

Heavy metal contamination impacts the structure and co‐occurrence patterns of bacterial communities in agricultural soils

J Liu, S Pei, Q Zheng, J Li, X Liu, Y Ruan… - Journal of Basic …, 2024 - Wiley Online Library
Heavy metal (HM) contamination caused by mining and smelting activities can be harmful to
soil microbiota, which are highly sensitive to HM stress. Here, we explore the effects of HM …

Microbial diversity and processes in groundwater

L Fillinger, C Griebler, J Hellal, C Joulian… - … Ecology and Evolution, 2023 - Elsevier
A large fraction of the total global prokaryotic biomass lives in the groundwater-saturated
zones of the continental subsurface. Groundwater environments are dark, and typically …