Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation

LE Flagel, JF Wendel - New Phytologist, 2010 - Wiley Online Library
Here, we describe the evolution of gene expression among a diversified cohort of five
allopolyploid species in the cotton genus (Gossypium). Using this phylogenetic framework …

Gossypium genomics: trends, scope, and utilization for cotton improvement

Z Yang, G Qanmber, Z Wang, Z Yang, F Li - Trends in plant science, 2020 - cell.com
Cotton (Gossypium spp.) is the most important natural fiber crop worldwide. The diversity of
Gossypium species also provides an ideal model for investigating evolution and …

Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield

Z Ma, S He, X Wang, J Sun, Y Zhang, G Zhang, L Wu… - Nature …, 2018 - nature.com
Upland cotton is the most important natural-fiber crop. The genomic variation of diverse
germplasms and alleles underpinning fiber quality and yield should be extensively explored …

Population genomics reveals a fine‐scale recombination landscape for genetic improvement of cotton

C Shen, N Wang, C Huang, M Wang… - The Plant …, 2019 - Wiley Online Library
Recombination breaks up ancestral linkage disequilibrium, creates combinations of alleles,
affects the efficiency of natural selection, and plays a major role in crop domestication and …

Uncovering SNP and indel variations of tetraploid cottons by SLAF-seq

C Shen, X Jin, D Zhu, Z Lin - BMC genomics, 2017 - Springer
Abstract Background Cotton (Gossypium spp.), as the world's most utilized textile fibre
source, is an important, economically valuable crop worldwide. Understanding the genomic …

Duplicate gene expression in allopolyploid Gossypiumreveals two temporally distinct phases of expression evolution

L Flagel, J Udall, D Nettleton, J Wendel - BMC biology, 2008 - Springer
Background Polyploidy has played a prominent role in shaping the genomic architecture of
the angiosperms. Through allopolyploidization, several modern Gossypium (cotton) species …

DNA sequence evolution and rare homoeologous conversion in tetraploid cotton

JT Page, ZS Liechty, RH Alexander, K Clemons… - PLoS …, 2016 - journals.plos.org
Allotetraploid cotton species are a vital source of spinnable fiber for textiles. The polyploid
nature of the cotton genome raises many evolutionary questions as to the relationships …

Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites

X Liu, B Zhao, HJ Zheng, Y Hu, G Lu, CQ Yang… - Scientific reports, 2015 - nature.com
Of the two cultivated species of allopolyploid cotton, Gossypium barbadense produces extra-
long fibers for the production of superior textiles. We sequenced its genome (AD) 2 and …

Molecular dissection of interspecific variation between Gossypium hirsutum and Gossypium barbadense (cotton) by a backcross-self approach: I. Fiber elongation

P Chee, X Draye, CX Jiang, L Decanini… - Theoretical and Applied …, 2005 - Springer
The current study is the first installment of an effort to explore the secondary gene pool for
the enhancement of Upland cotton (Gossypium hirsutum L.) germplasm. We developed …

Genome sequence of Gossypium anomalum facilitates interspecific introgression breeding

Z Xu, J Chen, S Meng, P Xu, C Zhai, F Huang… - Plant …, 2022 - cell.com
Crop wild relatives are an important reservoir of natural biodiversity. However, incorporating
wild genetic diversity into breeding programs is often hampered by reproductive barriers and …