A New Catalog of Structural Variants in 1,301 A. thaliana Lines from Africa, Eurasia, and North America Reveals a Signature of Balancing Selection at Defense …
M Göktay, A Fulgione… - Molecular biology and …, 2021 - academic.oup.com
Genomic variation in the model plant Arabidopsis thaliana has been extensively used to
understand evolutionary processes in natural populations, mainly focusing on single …
understand evolutionary processes in natural populations, mainly focusing on single …
Epistasis and Genetic Regulation of Variation in the Arabidopsis Metabolome
NA Eckardt - 2008 - academic.oup.com
Many factors contribute to genetic and phenotypic variation within an interbreeding
population. Phenotypic variation within a species or population is highly complex; it is often …
population. Phenotypic variation within a species or population is highly complex; it is often …
Adding levels of complexity enhances robustness and evolvability in a multilevel genotype–phenotype map
Robustness and evolvability are the main properties that account for the stability and
accessibility of phenotypes. They have been studied in a number of computational genotype …
accessibility of phenotypes. They have been studied in a number of computational genotype …
Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits
M Imprialou, A Kahles, JG Steffen, EJ Osborne… - Genetics, 2017 - academic.oup.com
Structural Rearrangements can have unexpected effects on quantitative phenotypes.
Surprisingly, these rearrangements can also be considered as... To understand the …
Surprisingly, these rearrangements can also be considered as... To understand the …
Arabidopsis paves the way: genomic and network analyses in crops
T Ferrier, JT Matus, J Jin, JL Riechmann - Current Opinion in …, 2011 - Elsevier
Arabidopsis genomic and network analyses have facilitated crop research towards the
understanding of many biological processes of fundamental importance for agriculture …
understanding of many biological processes of fundamental importance for agriculture …
[HTML][HTML] State-of-the-art technology and applications in crop phenomics
Together with the rise of whole-genome sequencing of many plant species, large-scale and
high-throughput plant phenotyping (HTP), as well as associated phenotypic analysis, has …
high-throughput plant phenotyping (HTP), as well as associated phenotypic analysis, has …
Network theory for data-driven epistasis networks
CA Lareau, BA McKinney - Epistasis: Methods and Protocols, 2015 - Springer
One of the challenges of understanding the genetic basis of complex phenotypes is
explaining variability not attributable to individual genes. While most existing methods that …
explaining variability not attributable to individual genes. While most existing methods that …
[HTML][HTML] The utility of fitness landscapes and big data for predicting evolution
The prospect that we may be able to predict the outcome of future evolutionary processes
has motivated recent investigations of the factors that determine this predictability (Lässig et …
has motivated recent investigations of the factors that determine this predictability (Lässig et …
Genetic regulatory network motifs constrain adaptation through curvature in the landscape of mutational (co) variance
TD Hether, PA Hohenlohe - Evolution, 2014 - academic.oup.com
Abstract Systems biology is accumulating a wealth of understanding about the structure of
genetic regulatory networks, leading to a more complete picture of the complex genotype …
genetic regulatory networks, leading to a more complete picture of the complex genotype …
Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity
D Lang, B Weiche, G Timmerhaus… - Genome Biology and …, 2010 - academic.oup.com
Evolutionary retention of duplicated genes encoding transcription-associated proteins
(TAPs, comprising transcription factors and other transcriptional regulators) has been …
(TAPs, comprising transcription factors and other transcriptional regulators) has been …