Encodings and models for antimicrobial peptide classification for multi-resistant pathogens
S Spänig, D Heider - BioData Mining, 2019 - Springer
Antimicrobial peptides (AMPs) are part of the inherent immune system. In fact, they occur in
almost all organisms including, eg, plants, animals, and humans. Remarkably, they show …
almost all organisms including, eg, plants, animals, and humans. Remarkably, they show …
Characterization and identification of antimicrobial peptides with different functional activities
In recent years, antimicrobial peptides (AMPs) have become an emerging area of focus
when developing therapeutics hot spot residues of proteins are dominant against infections …
when developing therapeutics hot spot residues of proteins are dominant against infections …
ClassAMP: a prediction tool for classification of antimicrobial peptides
Antimicrobial peptides (AMPs) are gaining popularity as anti-infective agents. Information on
sequence features that contribute to target specificity of AMPs will aid in accelerating drug …
sequence features that contribute to target specificity of AMPs will aid in accelerating drug …
Handcrafted versus non-handcrafted (self-supervised) features for the classification of antimicrobial peptides: complementary or redundant?
CR García-Jacas, LA García-González… - Briefings in …, 2022 - academic.oup.com
Antimicrobial peptides (AMPs) have received a great deal of attention given their potential to
become a plausible option to fight multi-drug resistant bacteria as well as other pathogens …
become a plausible option to fight multi-drug resistant bacteria as well as other pathogens …
Comparative analysis of machine learning algorithms on the microbial strain-specific AMP prediction
B Vishnepolsky, M Grigolava… - Briefings in …, 2022 - academic.oup.com
The evolution of drug-resistant pathogenic microbial species is a major global health
concern. Naturally occurring, antimicrobial peptides (AMPs) are considered promising …
concern. Naturally occurring, antimicrobial peptides (AMPs) are considered promising …
Target-AMP: Computational prediction of antimicrobial peptides by coupling sequential information with evolutionary profile
Antimicrobial peptides (AMPs) are gaining a lot of attention as cutting-edge treatments for
many infectious disorders. The effectiveness of AMPs against bacteria, fungi, and viruses …
many infectious disorders. The effectiveness of AMPs against bacteria, fungi, and viruses …
Improving recognition of antimicrobial peptides and target selectivity through machine learning and genetic programming
Growing bacterial resistance to antibiotics is spurring research on utilizing naturally-
occurring antimicrobial peptides (AMPs) as templates for novel drug design. While …
occurring antimicrobial peptides (AMPs) as templates for novel drug design. While …
ABP-Finder: a tool to identify antibacterial peptides and the Gram-staining type of targeted bacteria
YB Ruiz-Blanco, G Agüero-Chapin, S Romero-Molina… - Antibiotics, 2022 - mdpi.com
Multi-drug resistance in bacteria is a major health problem worldwide. To overcome this
issue, new approaches allowing for the identification and development of antibacterial …
issue, new approaches allowing for the identification and development of antibacterial …
A novel antibacterial peptide recognition algorithm based on BERT
Y Zhang, J Lin, L Zhao, X Zeng… - Briefings in bioinformatics, 2021 - academic.oup.com
As the best substitute for antibiotics, antimicrobial peptides (AMPs) have important research
significance. Due to the high cost and difficulty of experimental methods for identifying …
significance. Due to the high cost and difficulty of experimental methods for identifying …
AmPEP: Sequence-based prediction of antimicrobial peptides using distribution patterns of amino acid properties and random forest
Antimicrobial peptides (AMPs) are promising candidates in the fight against multidrug-
resistant pathogens owing to AMPs' broad range of activities and low toxicity. Nonetheless …
resistant pathogens owing to AMPs' broad range of activities and low toxicity. Nonetheless …
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