Characterization and identification of antimicrobial peptides with different functional activities

CR Chung, TR Kuo, LC Wu, TY Lee… - Briefings in …, 2020 - academic.oup.com
In recent years, antimicrobial peptides (AMPs) have become an emerging area of focus
when developing therapeutics hot spot residues of proteins are dominant against infections …

iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities

J Xu, F Li, C Li, X Guo, C Landersdorfer… - Briefings in …, 2023 - academic.oup.com
Antimicrobial peptides (AMPs) are short peptides that play crucial roles in diverse biological
processes and have various functional activities against target organisms. Due to the abuse …

AI4AMP: an antimicrobial Peptide predictor using physicochemical property-Based encoding method and deep learning

TT Lin, LY Yang, IH Lu, WC Cheng, ZR Hsu, SH Chen… - Msystems, 2021 - Am Soc Microbiol
Antimicrobial peptides (AMPs) are innate immune components that have recently stimulated
considerable interest among drug developers due to their potential as antibiotic substitutes …

[HTML][HTML] Recent progress in the discovery and design of antimicrobial peptides using traditional machine learning and deep learning

J Yan, J Cai, B Zhang, Y Wang, DF Wong, SWI Siu - Antibiotics, 2022 - mdpi.com
Antimicrobial resistance has become a critical global health problem due to the abuse of
conventional antibiotics and the rise of multi-drug-resistant microbes. Antimicrobial peptides …

[HTML][HTML] Encodings and models for antimicrobial peptide classification for multi-resistant pathogens

S Spänig, D Heider - BioData Mining, 2019 - Springer
Antimicrobial peptides (AMPs) are part of the inherent immune system. In fact, they occur in
almost all organisms including, eg, plants, animals, and humans. Remarkably, they show …

Comprehensive assessment of machine learning-based methods for predicting antimicrobial peptides

J Xu, F Li, A Leier, D Xiang, HH Shen… - Briefings in …, 2021 - academic.oup.com
Antimicrobial peptides (AMPs) are a unique and diverse group of molecules that play a
crucial role in a myriad of biological processes and cellular functions. AMP-related studies …

[HTML][HTML] Characterization and identification of natural antimicrobial peptides on different organisms

CR Chung, JH Jhong, Z Wang, S Chen, Y Wan… - International journal of …, 2020 - mdpi.com
Because of the rapid development of multidrug resistance, conventional antibiotics cannot
kill pathogenic bacteria efficiently. New antibiotic treatments such as antimicrobial peptides …

A review on antimicrobial peptides databases and the computational tools

S Ramazi, N Mohammadi, A Allahverdi, E Khalili… - Database, 2022 - academic.oup.com
Abstract Antimicrobial Peptides (AMPs) have been considered as potential alternatives for
infection therapeutics since antibiotic resistance has been raised as a global problem. The …

Empirical comparison of web-based antimicrobial peptide prediction tools

MN Gabere, WS Noble - Bioinformatics, 2017 - academic.oup.com
Abstract Motivation Antimicrobial peptides (AMPs) are innate immune molecules that exhibit
activities against a range of microbes, including bacteria, fungi, viruses and protozoa …

[HTML][HTML] Prediction of antimicrobial peptides based on sequence alignment and feature selection methods

P Wang, L Hu, G Liu, N Jiang, X Chen, J Xu, W Zheng… - PloS one, 2011 - journals.plos.org
Antimicrobial peptides (AMPs) represent a class of natural peptides that form a part of the
innate immune system, and this kind of 'nature's antibiotics' is quite promising for solving the …