Asymmetric epigenome maps of subgenomes reveal imbalanced transcription and distinct evolutionary trends in Brassica napus

Q Zhang, P Guan, L Zhao, M Ma, L Xie, Y Li, R Zheng… - Molecular Plant, 2021 - cell.com
The complexity of the epigenome landscape and transcriptional regulation is significantly
increased during plant polyploidization, which drives genome evolution and contributes to …

Brassica rapa Domestication: Untangling Wild and Feral Forms and Convergence of Crop Morphotypes

AC McAlvay, AP Ragsdale, ME Mabry… - Molecular biology …, 2021 - academic.oup.com
The study of domestication contributes to our knowledge of evolution and crop genetic
resources. Human selection has shaped wild Brassica rapa into diverse turnip, leafy, and …

Evolutionary origins and dynamics of octoploid strawberry subgenomes revealed by dense targeted capture linkage maps

JA Tennessen, R Govindarajulu… - Genome biology and …, 2014 - academic.oup.com
Whole-genome duplications are radical evolutionary events that have driven speciation and
adaptation in many taxa. Higher-order polyploids have complex histories often including …

Conservation of the microstructure of genome segments in Brassica napus and its diploid relatives

D Rana, T van den Boogaart, CM O'Neill… - The Plant …, 2004 - Wiley Online Library
The cultivated Brassica species are the group of crops most closely related to Arabidopsis
thaliana (Arabidopsis). They represent models for the application in crops of genomic …

Nested whole-genome duplications coincide with diversification and high morphological disparity in Brassicaceae

N Walden, DA German, EM Wolf, M Kiefer… - Nature …, 2020 - nature.com
Angiosperms have become the dominant terrestrial plant group by diversifying for~ 145
million years into a broad range of environments. During the course of evolution, numerous …

Deciphering the Diploid Ancestral Genome of the Mesohexaploid Brassica rapa

F Cheng, T Mandáková, J Wu, Q Xie, MA Lysak… - The Plant …, 2013 - academic.oup.com
The genus Brassica includes several important agricultural and horticultural crops. Their
current genome structures were shaped by whole-genome triplication followed by extensive …

Genomic insights into the origin, domestication and diversification of Brassica juncea

L Kang, L Qian, M Zheng, L Chen, H Chen, L Yang… - Nature …, 2021 - nature.com
Despite early domestication around 3000 BC, the evolutionary history of the ancient
allotetraploid species Brassica juncea (L.) Czern & Coss remains uncertain. Here, we report …

A chromosome-level reference genome of non-heading Chinese cabbage [Brassica campestris (syn. Brassica rapa) ssp. chinensis]

Y Li, GF Liu, LM Ma, TK Liu, CW Zhang… - Horticulture …, 2020 - academic.oup.com
Non-heading Chinese cabbage (NHCC) is an important leafy vegetable cultivated
worldwide. Here, we report the first high-quality, chromosome-level genome of NHCC001 …

Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics

WB Jiao, K Schneeberger - Nature communications, 2020 - nature.com
Despite hundreds of sequenced Arabidopsis genomes, very little is known about the degree
of genomic collinearity within single species, due to the low number of chromosome-level …

A genome triplication associated with early diversification of the core eudicots

Y Jiao, J Leebens-Mack, S Ayyampalayam, JE Bowers… - Genome biology, 2012 - Springer
Background Although it is agreed that a major polyploidy event, gamma, occurred within the
eudicots, the phylogenetic placement of the event remains unclear. Results To determine …