Phenotypic diversity and evolutionary innovation ultimately trace to variation in genomic
sequence and rewiring of regulatory networks. Here, we constructed a pan-genome of the …

Polyploidy is an evolutionary innovation for many animals and all flowering plants, but its
impact on selection and domestication remains elusive. Here we analyze genome evolution …

Cotton produces natural fiber for the textile industry. The genetic effects of genomic structural
variations underlying agronomic traits remain unclear. Here, we generate two high-quality …

Comparative population genomics offers an excellent opportunity for unraveling the genetic
history of crop domestication. Upland cotton (Gossypium hirsutum) has long been an …

Large-scale genomic surveys of crop germplasm are important for understanding the
genetic architecture of favorable traits. The genomic basis of geographic differentiation and …

Polyploidy complicates transcriptional regulation and increases phenotypic diversity in
organisms. The dynamics of genetic regulation of gene expression between coresident …

Cotton (Gossypium spp.) is the most important natural fiber crop worldwide. The diversity of
Gossypium species also provides an ideal model for investigating evolution and …

Cis and trans regulatory divergence underlies phenotypic and evolutionary diversification.
Relatively little is understood about the complexity of regulatory evolution accompanying …

Upland cotton is a model for polyploid crop domestication and transgenic improvement.
Here we sequenced the allotetraploid Gossypium hirsutum L. acc. TM-1 genome by …

The single-celled cotton (Gossypium hirsutum) fiber provides an excellent model to
investigate how human selection affects phenotypic evolution. To gain insight into the …