A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks
Background The accurate identification of protein complexes is important for the
understanding of cellular organization. Up to now, computational methods for protein …
understanding of cellular organization. Up to now, computational methods for protein …
Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks
Background Protein complexes are one of the keys to deciphering the behavior of a cell
system. During the past decade, most computational approaches used to identify protein …
system. During the past decade, most computational approaches used to identify protein …
Weighted edge based clustering to identify protein complexes in protein–protein interaction networks incorporating gene expression profile
S Keretsu, R Sarmah - Computational Biology and Chemistry, 2016 - Elsevier
Protein complex detection from protein–protein interaction (PPI) network has received a lot
of focus in recent years. A number of methods identify protein complexes as dense sub …
of focus in recent years. A number of methods identify protein complexes as dense sub …
An effective link-based clustering algorithm for detecting overlapping protein complexes in protein-protein interaction networks
Protein complexes are one most important kind of functional modules for biological
processes in cells. In this regard, their detection is vital for understanding the principle of cell …
processes in cells. In this regard, their detection is vital for understanding the principle of cell …
A method based on local density and random walks for complexes detection in protein interaction networks
L Yu, L Gao, K Li - Journal of Bioinformatics and Computational …, 2010 - World Scientific
In this paper, we present a method based on local density and random walks (LDRW) for
core-attachment complexes detection in protein-protein interaction (PPI) networks whether …
core-attachment complexes detection in protein-protein interaction (PPI) networks whether …
CAMWI: Detecting protein complexes using weighted clustering coefficient and weighted density
S Jalili, SA Marashi - Computational biology and chemistry, 2015 - Elsevier
Detection of protein complexes is very important to understand the principles of cellular
organization and function. Recently, large protein–protein interactions (PPIs) networks have …
organization and function. Recently, large protein–protein interactions (PPIs) networks have …
An effective approach to detecting both small and large complexes from protein-protein interaction networks
Background Predicting protein complexes from protein-protein interaction (PPI) networks
has been studied for decade. Various methods have been proposed to address some …
has been studied for decade. Various methods have been proposed to address some …
Protein complex detection in ppi network by identifying mutually exclusive protein-protein interactions
SKMM Hossain, Z Mahboob, R Chowdhury… - Procedia Computer …, 2016 - Elsevier
Identifying protein complexes within Protein-Protein Interaction Networks (PPINs) is an
important task in computational biology for analyzing biological processes and pathways. A …
important task in computational biology for analyzing biological processes and pathways. A …
A core-attachment based method to detect protein complexes in PPI networks
Background How to detect protein complexes is an important and challenging task in post
genomic era. As the increasing amount of protein-protein interaction (PPI) data are …
genomic era. As the increasing amount of protein-protein interaction (PPI) data are …
Protein complex detection with semi-supervised learning in protein interaction networks
Abstract Background Protein-protein interactions (PPIs) play fundamental roles in nearly all
biological processes. The systematic analysis of PPI networks can enable a great …
biological processes. The systematic analysis of PPI networks can enable a great …
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