Keystone taxa as drivers of microbiome structure and functioning

S Banerjee, K Schlaeppi… - Nature Reviews …, 2018 - nature.com
… , as well as in the human microbiome. We explore the importance of keystone taxa and
keystone guilds for microbiome structure and functioning and discuss the factors that determine …

Top-down identification of keystone taxa in the microbiome

G Amit, A Bashan - Nature Communications, 2023 - nature.com
… pair-wise with a specific functional form. Another drawback, … strength-based or structure-based
keystones, simulate cohorts … hand, keystone taxa may be used as the main drivers when …

Specialized metabolic functions of keystone taxa sustain soil microbiome stability

W Xun, Y Liu, W Li, Y Ren, W Xiong, Z Xu, N Zhang… - Microbiome, 2021 - Springer
keystone taxa can drive microbial community assembly [16, 17]. These keystone taxa are
highly connected taxa … roles in organizing the structure of the soil microbiome, with downstream …

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

S Banerjee, F Walder, L Büchi, M Meyer… - The ISME …, 2019 - academic.oup.com
… (c) Which taxa act as keystone and what are the drivers of such taxa in the root microbiota? …
the causality, in terms of the impact of keystone taxa on microbiome structure and functioning. …

Organic fertilization drives shifts in microbiome complexity and keystone taxa increase the resistance of microbial mediated functions to biodiversity loss

J Luo, S Banerjee, Q Ma, G Liao, B Hu, H Zhao… - Biology and Fertility of …, 2023 - Springer
functions and plays a central role in driving nutrient cycling, organic matter decomposition,
and climate regulation, with direct feedback effects on multiple ecosystem functions (… structure

Keystone taxa predict compositional change in microbial communities

CM Herren, KD McMahon - Environmental Microbiology, 2018 - Wiley Online Library
… disturbance was a strong driver of compositional change. We used … We then applied this
workflow to data from the Human Microbiome … what traits or functions these keystone taxa share. …

Next generation microbiome research: identification of keystone species in the metabolic regulation of host-gut microbiota interplay

H Tudela, SP Claus, M Saleh - Frontiers in cell and developmental …, 2021 - frontiersin.org
… identification of such keystone species functions is a major … influence on microbiome structure
and functioning irrespective … list of prominent keystone taxa of the human gut microbiome. …

Characterization of two keystone taxa, sulfur-oxidizing, and nitrate-reducing bacteria, by tracking their role transitions in the benzo [a] pyrene degradative microbiome

X Lin, B Qiao, R Chang, Y Li, W Zheng, Z He, Y Tian - Microbiome, 2023 - Springer
Keystone taxa are drivers of microbiome structure and functioning, which may play critical
roles in microbiome-level responses to recalcitrant pollution and are a key to bioremediation. …

Keystone microbial taxa regulate the invasion of a fungal pathogen in agro-ecosystems

P Trivedi, M Delgado-Baquerizo, C Trivedi… - Soil Biology and …, 2017 - Elsevier
… Integrating suppressive microbiome may help in engineering … pathways to identify drivers
of soil suppressiveness at a … Our results suggest that specific functions such as pathogen …

Reply to 'Can we predict microbial keystones?'

S Banerjee, K Schlaeppi… - Nature Reviews …, 2019 - nature.com
… Opinion article (Keystone taxa as drivers of microbiome structure and functioning. Nat. Rev.
… While Röttjers and Faust only consider empirically established keystone taxa, our aim was to …