PathwayMap: molecular pathway association with self-normalizing neural networks
J Jimenez, D Sabbadin, A Cuzzolin… - Journal of chemical …, 2018 - ACS Publications
… In this work, we describe a deep self-normalizing neural network model for the prediction of
molecular pathway association and evaluate its performance, showing an AUC ranging from …
molecular pathway association and evaluate its performance, showing an AUC ranging from …
Machine learning in drug discovery
G Klambauer, S Hochreiter… - Journal of chemical …, 2019 - ACS Publications
… Association of molecules with pathways can be addressed with self-normalizing neural
networks. (7) Membrane permeation of drug molecules can also be considered and tackled by …
networks. (7) Membrane permeation of drug molecules can also be considered and tackled by …
Assessment of potassium ion channel during electric signalling in biofilm formation of Acinetobacter baumannii for finding antibiofilm molecule
M Tiwari, S Panwar, V Tiwari - Heliyon, 2023 - cell.com
… The interaction of leads with metabolic pathway was modelled using KEGG and Reactome
database, based on self-normalizing neural networks for the identification of pathway. The …
database, based on self-normalizing neural networks for the identification of pathway. The …
Pharmacophore screening, denovo designing, retrosynthetic analysis, and combinatorial synthesis of a novel lead VTRA1. 1 against RecA protein of Acinetobacter …
V Tiwari - Chemical Biology & Drug Design, 2022 - Wiley Online Library
… -pathway interactions using PathwayMap which is based on self-normalizing neural networks
for pathway … model was used to predict molecule pathway association using KEGG and …
for pathway … model was used to predict molecule pathway association using KEGG and …
Joint virtual special issue on computational toxicology
… However, by using a novel molecular graph encoding and convolutional neural network …
deep self-normalizing neural network model for the prediction of molecular pathway association …
deep self-normalizing neural network model for the prediction of molecular pathway association …
Coloring molecules with explainable artificial intelligence for preclinical relevance assessment
J Jiménez-Luna, M Skalic, N Weskamp… - Journal of Chemical …, 2021 - ACS Publications
… While the main goal of the study is not to evaluate the predictive performance of graph
neural networks compared to other machine-learning models, to assess whether the proposed …
neural networks compared to other machine-learning models, to assess whether the proposed …
[PDF][PDF] Role of Artificial Neural Networks in Pharmaceutical Sciences.
TB Teja, M Sekar, T Pallavi, S Mettu… - Journal of Young …, 2022 - jyoungpharm.org
… disease heterogeneity, discovering dysregulated molecular pathways and therapeutic targets,
… SMILES enumeration as data augmentation for neural network modeling of molecules. …
… SMILES enumeration as data augmentation for neural network modeling of molecules. …
Model organism life extending therapeutics modulate diverse nodes in the drug-gene-microbe tripartite human longevity interactome
R Salekeen, MS Lustgarten, U Khan… - Journal of Biomolecular …, 2024 - Taylor & Francis
… network perturbations by drug molecules, deep self-normalizing neural-network based
metabolic pathway interaction probability predictions were simulated using the PathwayMap tool (…
metabolic pathway interaction probability predictions were simulated using the PathwayMap tool (…
Therapeutic target database update 2022: facilitating drug discovery with enriched comparative data of targeted agents
… , the molecular structure of the hit against a target (first molecule found to bind … molecules,
particularly the structural derivatives of a hit, largely follow certain structure-activity relationship …
particularly the structural derivatives of a hit, largely follow certain structure-activity relationship …
Drug discovery with explainable artificial intelligence
… We have to concede our incomplete understanding of molecular pathology and our inability
… the use of the derivative of the output of the neural network with respect to the input (that is, δf…
… the use of the derivative of the output of the neural network with respect to the input (that is, δf…