PathwayMap: molecular pathway association with self-normalizing neural networks

J Jimenez, D Sabbadin, A Cuzzolin… - Journal of chemical …, 2018 - ACS Publications
… In this work, we describe a deep self-normalizing neural network model for the prediction of
molecular pathway association and evaluate its performance, showing an AUC ranging from …

Machine learning in drug discovery

G Klambauer, S Hochreiter… - Journal of chemical …, 2019 - ACS Publications
Association of molecules with pathways can be addressed with self-normalizing neural
networks. (7) Membrane permeation of drug molecules can also be considered and tackled by …

Assessment of potassium ion channel during electric signalling in biofilm formation of Acinetobacter baumannii for finding antibiofilm molecule

M Tiwari, S Panwar, V Tiwari - Heliyon, 2023 - cell.com
… The interaction of leads with metabolic pathway was modelled using KEGG and Reactome
database, based on self-normalizing neural networks for the identification of pathway. The …

Pharmacophore screening, denovo designing, retrosynthetic analysis, and combinatorial synthesis of a novel lead VTRA1. 1 against RecA protein of Acinetobacter …

V Tiwari - Chemical Biology & Drug Design, 2022 - Wiley Online Library
… -pathway interactions using PathwayMap which is based on self-normalizing neural networks
for pathway … model was used to predict molecule pathway association using KEGG and …

Joint virtual special issue on computational toxicology

IV Tetko, A Tropsha - Journal of Chemical Information and …, 2020 - ACS Publications
… However, by using a novel molecular graph encoding and convolutional neural network
deep self-normalizing neural network model for the prediction of molecular pathway association

Coloring molecules with explainable artificial intelligence for preclinical relevance assessment

J Jiménez-Luna, M Skalic, N Weskamp… - Journal of Chemical …, 2021 - ACS Publications
… While the main goal of the study is not to evaluate the predictive performance of graph
neural networks compared to other machine-learning models, to assess whether the proposed …

[PDF][PDF] Role of Artificial Neural Networks in Pharmaceutical Sciences.

TB Teja, M Sekar, T Pallavi, S Mettu… - Journal of Young …, 2022 - jyoungpharm.org
… disease heterogeneity, discovering dysregulated molecular pathways and therapeutic targets,
… SMILES enumeration as data augmentation for neural network modeling of molecules. …

Model organism life extending therapeutics modulate diverse nodes in the drug-gene-microbe tripartite human longevity interactome

R Salekeen, MS Lustgarten, U Khan… - Journal of Biomolecular …, 2024 - Taylor & Francis
network perturbations by drug molecules, deep self-normalizing neural-network based
metabolic pathway interaction probability predictions were simulated using the PathwayMap tool (…

Therapeutic target database update 2022: facilitating drug discovery with enriched comparative data of targeted agents

Y Zhou, Y Zhang, X Lian, F Li, C Wang… - Nucleic acids …, 2022 - academic.oup.com
… , the molecular structure of the hit against a target (first molecule found to bind … molecules,
particularly the structural derivatives of a hit, largely follow certain structure-activity relationship

Drug discovery with explainable artificial intelligence

J Jiménez-Luna, F Grisoni, G Schneider - Nature Machine Intelligence, 2020 - nature.com
… We have to concede our incomplete understanding of molecular pathology and our inability
… the use of the derivative of the output of the neural network with respect to the input (that is, δf…