Prediction of effector proteins and their implications in pathogenicity of phytopathogenic filamentous fungi: a review
Y Wu, L Xie, Y Jiang, T Li - International Journal of Biological …, 2022 - Elsevier
… Hence, we summarize the molecular pathogenic mechanisms of effector proteins in filamentous
fungi based on their subcellular localization in Table 1; however, some effector proteins …
fungi based on their subcellular localization in Table 1; however, some effector proteins …
Bioinformatic prediction of plant–pathogenicity effector proteins of fungi
… In this review we outline the current methods for the prediction of fungal plant pathogenicity
effector proteins. Some fungal effectors have been … RXLR phytopathogen effector protein …
effector proteins. Some fungal effectors have been … RXLR phytopathogen effector protein …
Prediction of effector protein structures from fungal phytopathogens enables evolutionary analyses
K Seong, KV Krasileva - Nature Microbiology, 2023 - nature.com
… effector evolution at the structural level, we predicted with AF2 the folds of 26,653 secreted
proteins from 14 agriculturally important fungal phytopathogens 22 , six non-pathogenic fungi …
proteins from 14 agriculturally important fungal phytopathogens 22 , six non-pathogenic fungi …
EffectorP: predicting fungal effector proteins from secretomes using machine learning
… Therefore, we determined the impact of this feature on effector classification. Figure 3
shows the … We used 1922 manually curated secreted proteins from both pathogenic and …
shows the … We used 1922 manually curated secreted proteins from both pathogenic and …
EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
J Sperschneider, PN Dodds - Molecular plant-microbe …, 2022 - Am Phytopath Society
… proteins with an RxLR motif from plant-pathogenic oomycetes together with secreted …
EffectorP versions 1.0 and 2.0 had a major impact on the plant-pathogen community and …
EffectorP versions 1.0 and 2.0 had a major impact on the plant-pathogen community and …
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
J Sperschneider, PN Dodds… - … plant pathology, 2018 - Wiley Online Library
… Plant-pathogenic fungi secrete effector proteins to facilitate infection. We describe extensive
… To minimize this effect, we filtered the predicted pathogen secretomes for EffectorP 1.0-…
… To minimize this effect, we filtered the predicted pathogen secretomes for EffectorP 1.0-…
Computational prediction of effector proteins in fungi: opportunities and challenges
… effector protein SnTox1 identified in the fungal pathogen Stagonospora nodorum, which
consists of 117 amino acids with the first 17 predicted … effectors of animal- and plant–pathogenic …
consists of 117 amino acids with the first 17 predicted … effectors of animal- and plant–pathogenic …
Comprehensive prediction of plant cytoplasmic and apoplastic effectors underlying Erwinia psidii pathogenicity
FHNS Alves, IC Pereira, SA dos Santos… - … Pathology, 2023 - Wiley Online Library
… of effectors conserved among Eps strains impact virulence … that many phytopathogenic
bacteria secrete effector proteins to … For many gram-negative bacteria, pathogenicity is highly …
bacteria secrete effector proteins to … For many gram-negative bacteria, pathogenicity is highly …
Accurate plant pathogen effector protein classification ab initio with deepredeff: an ensemble of convolutional neural networks
R Kristianingsih, D MacLean - BMC bioinformatics, 2021 - Springer
… We compared against predictions from the bacterial effector prediction programs …
phytopathogen effectors we have collected should be all those shown experimentally to have an …
phytopathogen effectors we have collected should be all those shown experimentally to have an …
ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning
J Sperschneider, PN Dodds, KB Singh… - New …, 2018 - Wiley Online Library
… , signalling and defence against plant-pathogenic microbes. The … pathogen effectors poses
a challenge for their prediction … signal peptide region had no impact on the false positive rate …
a challenge for their prediction … signal peptide region had no impact on the false positive rate …