Cell types in environmental epigenetic studies: biological and epidemiological frameworks
KA Campbell, JA Colacino, SK Park… - Current environmental …, 2020 - Springer
… simplifies the causal diagram and reduces sources of potential bias. … Now, we focus on
modeling the tissue epigenotype as the outcome to understand the role cellular heterogeneity …
modeling the tissue epigenotype as the outcome to understand the role cellular heterogeneity …
Not every estimate counts–evaluation of cell composition estimation approaches in brain bulk tissue data
… a major caveat of heterogeneity in the cellular composition of … The strong bias towards
cell type-specific H3K27ac regions … fold of change in all peaks overlapping with a cell type-specific …
cell type-specific H3K27ac regions … fold of change in all peaks overlapping with a cell type-specific …
Epigenetic research in neuropsychiatric disorders: the “tissue issue”
KM Bakulski, A Halladay, VW Hu, J Mill… - Current behavioral …, 2016 - Springer
… Brain tissue studies are challenged by small sample sizes of cases and controls, incomplete
phenotyping, post-mortem timing, and cellular heterogeneity, … Further, there may be bias in …
phenotyping, post-mortem timing, and cellular heterogeneity, … Further, there may be bias in …
Epigenetics of cell fate reprogramming and its implications for neurological disorders modelling
M Grzybek, A Golonko, M Walczak, P Lisowski - Neurobiology of Disease, 2017 - Elsevier
… We conclude that sample heterogeneity masks … particular, we suggest that exploitation of
the single-cell composition of the epigenome will provide important insights into heterogeneity …
the single-cell composition of the epigenome will provide important insights into heterogeneity …
Quantifying the proportion of different cell types in the human cortex using DNA methylation profiles
E Hannon, EL Dempster, JP Davies, B Chioza… - BMC biology, 2024 - Springer
… control of cellular heterogeneity in epigenetic studies of brain … that some cell types were
associated with a particular bias in … < 5 × 10 −3 , corrected for 10 cell types) for the prevalence of …
associated with a particular bias in … < 5 × 10 −3 , corrected for 10 cell types) for the prevalence of …
CHAS, a deconvolution tool, infers cell type-specific signatures in bulk brain histone acetylation studies of brain disorders
… not account for the high cellular heterogeneity in the brain. This can … cell epigenotype specific
model for the correction of brain cellular heterogeneity bias and its application to age, brain …
model for the correction of brain cellular heterogeneity bias and its application to age, brain …
Genetic architecture of epigenetic and neuronal ageing rates in human brain regions
… Third, we applied genomic control corrections to the meta-… SNPs that exhibited substantial
heterogeneity across studies … to detect and correct for the bias due to directional pleiotropy 41 . …
heterogeneity across studies … to detect and correct for the bias due to directional pleiotropy 41 . …
Hierarchical deconvolution for extensive cell type resolution in the human brain using DNA methylation
… the cellular heterogeneity and complexity of the brain is … -based algorithm, cell epigenotype
specific (CETS) marks, to … , including artificial bias in counting the cells and the destruction of …
specific (CETS) marks, to … , including artificial bias in counting the cells and the destruction of …
Large eQTL meta-analysis reveals differing patterns between cerebral cortical and cerebellar brain regions
… less than 18, to limit heterogeneity due to differences between the mature and developing
brain. … and to develop models to deconvolve the cell-type specific regulatory effects in different …
brain. … and to develop models to deconvolve the cell-type specific regulatory effects in different …
Epigenetic assimilation in the aging human brain
… boundaries change in older human brains and buccal cells. … the cellular heterogeneity
problem is either by flow sorting the … for ascertainment bias and confounding cellular composition …
problem is either by flow sorting the … for ascertainment bias and confounding cellular composition …