Whole-genome and transcriptome sequencing of prostate cancer identify new genetic alterations driving disease progression

S Ren, GH Wei, D Liu, L Wang, Y Hou, S Zhu, L Peng… - European urology, 2018 - Elsevier
… We reported the first large-scale and comprehensive genomic data … Somatic mutation
landscape of 65 prostate cancer patients … This analysis revealed that low expression of SLIT2 was …

The mutational landscape of the SCAN‐B real‐world primary breast cancer transcriptome

C Brueffer, S Gladchuk, C Winter… - EMBO molecular …, 2020 - embopress.org
… from RNA sequencing (RNA-seq) data. The mutational landscape of 3,217 primary breast
cancer … Large-scale projects such as TCGA and SCAN-B generate vast amounts of data, but …

Somatic mutation landscapes at single-molecule resolution

F Abascal, LMR Harvey, E Mitchell, ARJ Lawson… - Nature, 2021 - nature.com
… samples, enabling studies of somatic mutagenesis in large-scale cohorts, across genetic …
inferred from the sequencing data (using Piccard’s software). This analysis revealed that, for …

Genomic and transcriptomic landscape of tumor clonal evolution in cholangiocarcinoma

G Chen, Z Cai, X Dong, J Zhao, S Lin, X Hu… - Frontiers in …, 2020 - frontiersin.org
… whole exome sequencing and transcriptome sequencing, we … GO analysis revealed that the
mutated genes were most relevant to … , creating a large-scale change of tumor transcriptome. …

Characterization of the genomic landscape and actionable mutations in Chinese breast cancers by clinical sequencing

GT Lang, YZ Jiang, JX Shi, F Yang, XG Li… - Nature …, 2020 - nature.com
large-scale prospective clinical sequencing program using the Fudan-BC panel, and
comprehensively analyze the clinical and genomic … A pairwise analysis revealed that the PI3K and …

RNA sequence analysis reveals macroscopic somatic clonal expansion across normal tissues

K Yizhak, F Aguet, J Kim, JM Hess, K Kübler, J Grimsby… - Science, 2019 - science.org
Large-scale studies analyzing DNA sequencing data are needed to better distinguish … the
disease while considering the nonpathogenic landscape of mutations. Such findings may have …

[HTML][HTML] Recent advances in prostate cancer research: Large-scale genomic analyses reveal novel driver mutations and DNA repair defects

S Frank, P Nelson, V Vasioukhin - F1000Research, 2018 - ncbi.nlm.nih.gov
… of the genomic landscape of primary and metastatic PCa, enabled by recent large-scale
sequencing … In a 2015 report, the authors used single-cell RNA sequencing on 76 CTCs from 12 …

Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer

A Fujimoto, M Furuta, Y Totoki, T Tsunoda, M Kato… - Nature …, 2016 - nature.com
… Here we provide a whole-genome landscape of somatic … Our comprehensive analysis
identified point mutations, structural … However, large-scale analysis of noncoding mutations and …

The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing

RE Rodin, Y Dou, M Kwon, MA Sherman… - Nature …, 2021 - nature.com
… enrichment of mutations in coding and putative regulatory regions. Our analysis reveals that
the first cell division after fertilization produces ~3.4 mutations, followed by 2–3 mutations in …

Mutational landscape of the transcriptome offers putative targets for immunotherapy of myeloproliferative neoplasms

F Schischlik, R Jäger, F Rosebrock… - Blood, The Journal …, 2019 - ashpublications.org
… Using whole-transcriptome sequencing, we analyzed RNA from granulocytes of 104 … for
which mutations in the splicing machinery have been described. This analysis revealed that the 3…