Whole-genome and transcriptome sequencing of prostate cancer identify new genetic alterations driving disease progression
… We reported the first large-scale and comprehensive genomic data … Somatic mutation
landscape of 65 prostate cancer patients … This analysis revealed that low expression of SLIT2 was …
landscape of 65 prostate cancer patients … This analysis revealed that low expression of SLIT2 was …
The mutational landscape of the SCAN‐B real‐world primary breast cancer transcriptome
C Brueffer, S Gladchuk, C Winter… - EMBO molecular …, 2020 - embopress.org
… from RNA sequencing (RNA-seq) data. The mutational landscape of 3,217 primary breast
cancer … Large-scale projects such as TCGA and SCAN-B generate vast amounts of data, but …
cancer … Large-scale projects such as TCGA and SCAN-B generate vast amounts of data, but …
Somatic mutation landscapes at single-molecule resolution
… samples, enabling studies of somatic mutagenesis in large-scale cohorts, across genetic …
inferred from the sequencing data (using Piccard’s software). This analysis revealed that, for …
inferred from the sequencing data (using Piccard’s software). This analysis revealed that, for …
Genomic and transcriptomic landscape of tumor clonal evolution in cholangiocarcinoma
G Chen, Z Cai, X Dong, J Zhao, S Lin, X Hu… - Frontiers in …, 2020 - frontiersin.org
… whole exome sequencing and transcriptome sequencing, we … GO analysis revealed that the
mutated genes were most relevant to … , creating a large-scale change of tumor transcriptome. …
mutated genes were most relevant to … , creating a large-scale change of tumor transcriptome. …
Characterization of the genomic landscape and actionable mutations in Chinese breast cancers by clinical sequencing
GT Lang, YZ Jiang, JX Shi, F Yang, XG Li… - Nature …, 2020 - nature.com
… large-scale prospective clinical sequencing program using the Fudan-BC panel, and
comprehensively analyze the clinical and genomic … A pairwise analysis revealed that the PI3K and …
comprehensively analyze the clinical and genomic … A pairwise analysis revealed that the PI3K and …
RNA sequence analysis reveals macroscopic somatic clonal expansion across normal tissues
… Large-scale studies analyzing DNA sequencing data are needed to better distinguish … the
disease while considering the nonpathogenic landscape of mutations. Such findings may have …
disease while considering the nonpathogenic landscape of mutations. Such findings may have …
[HTML][HTML] Recent advances in prostate cancer research: Large-scale genomic analyses reveal novel driver mutations and DNA repair defects
S Frank, P Nelson, V Vasioukhin - F1000Research, 2018 - ncbi.nlm.nih.gov
… of the genomic landscape of primary and metastatic PCa, enabled by recent large-scale
sequencing … In a 2015 report, the authors used single-cell RNA sequencing on 76 CTCs from 12 …
sequencing … In a 2015 report, the authors used single-cell RNA sequencing on 76 CTCs from 12 …
Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer
… Here we provide a whole-genome landscape of somatic … Our comprehensive analysis
identified point mutations, structural … However, large-scale analysis of noncoding mutations and …
identified point mutations, structural … However, large-scale analysis of noncoding mutations and …
The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing
… enrichment of mutations in coding and putative regulatory regions. Our analysis reveals that
the first cell division after fertilization produces ~3.4 mutations, followed by 2–3 mutations in …
the first cell division after fertilization produces ~3.4 mutations, followed by 2–3 mutations in …
Mutational landscape of the transcriptome offers putative targets for immunotherapy of myeloproliferative neoplasms
F Schischlik, R Jäger, F Rosebrock… - Blood, The Journal …, 2019 - ashpublications.org
… Using whole-transcriptome sequencing, we analyzed RNA from granulocytes of 104 … for
which mutations in the splicing machinery have been described. This analysis revealed that the 3…
which mutations in the splicing machinery have been described. This analysis revealed that the 3…