Complementary-addressed site-directed spin labeling of long natural RNAs

ES Babaylova, AA Malygin, AA Lomzov… - Nucleic acids …, 2016 - academic.oup.com
… for long RNAs up-to-date. Here, we demonstrate that novel complementary-addressed SDSL
approach allows efficient spin labeling and following structural EPR studies of long RNAs. …

A review on recent advances in methods for site-directed spin labeling of long RNAs

K Huang, X Fang - International Journal of Biological Macromolecules, 2023 - Elsevier
… is inherently more flexible, which makes some well-established techniques for structural
determination of proteins, such as X-ray crystallography (XRC) and cryo-electron microscopy (…

Site-directed spin labeling for EPR studies of nucleic acids

SA Shelke, ST Sigurdsson - Modified Nucleic Acids, 2016 - Springer
determination of accurate distances in addition to orientations between two spin labels. This
chapter gives an overview of nucleic acids spin labelingspin-labeling method for RNA is the …

High-yield spin labeling of long RNAs for electron paramagnetic resonance spectroscopy

M Kerzhner, H Matsuoka, C Wuebben, M Famulok… - Biochemistry, 2018 - ACS Publications
… of biomacromolecules such as RNA. Here we introduce a spin labeling strategy based on
click … To determine the appropriate conformation for the two Gaussian components, the X-ray …

Synthesis of DNA and RNA containing rigid spin-and fluorescent labels for studies by EPR and fluorescence spectroscopies

ALJ Segler - 2021 - opinvisindi.is
… problem associated with spin-labeling by chemical synthesis of … label Çm into RNA with
quantitative spin-labeling efficiency. … and their spin labeling efficiency was determined by spin-…

Advancement of covalent and noncovalent nitroxide spin-labeling of RNA

S Saha - 2017 - opinvisindi.is
determined by fluorescence titration studies. This spin-labeling approach is the first example
of … and site-directed spin-labeling that involves a native (unmodified) RNA. Pulsed electron-…

Impact of spin label rigidity on extent and accuracy of distance information from PRE data

KA Schnorr, DB Gophane, C Helmling… - Journal of Biomolecular …, 2017 - Springer
… We determined PRE rates obtained from aromatic 13 C … directed spin labeling methods and
their application for RNA, … Here, we apply a previously established noncovalent spin labeling

Advancements in site-directed incorporation of rigid spin-labels into nucleic acids

HY Júlíusson - 2020 - opinvisindi.is
… in nitroxide spin-labeling of nucleic acids for structure determination using rigid … spin-labeling
of duplex DNA and RNA containing abasic sites. No specific binding was observed for RNA

Preparation of site-specifically spin-labeled RNA by in vitro transcription using an expanded genetic alphabet

L Bornewasser, S Kath-Schorr - DNAzymes: Methods and Protocols, 2022 - Springer
… Depending on the desired positions for spin labeling within the RNA sequence of interest, …
Determine the concentration of cleaned spin-labeled RNA by measuring the absorption at …

NMR solution structure determination of large RNA-protein complexes

DK Yadav, PJ Lukavsky - Progress in nuclear magnetic resonance …, 2016 - Elsevier
… the ssRNA sequence only affected residues which do not display base-specific recognition.
… ], with spin labeling in different positions for EPR measurements or with spin labeling and …