Statistical analysis of a vast body of data collected during five field seasons (2011–2015) was performed to characterize the biological activity of soils in the northern taiga ecosystems of Western Siberia. Automorphic forest soils, hydromorphic (oligotrophic bog) soils, and semihydromorphic (flat-topped and large peat mounds) soils were characterized. Statistically significant differences of average levels of CO₂ emission from the soils were identified at the ecosystem level. The CO₂ emission from podzols of automorphic forest ecosystems at the peak of the growing season (205 ± 30 to 410 ± 40 mg CO₂/(m² h)) was significantly higher than the emission from semihydromorphic soils of peat mounds (70 ± 20 to 116 ± 10 mg CO₂/(m² h)). The presence and depth of permafrost was a significant factor that affected ecosystem diversity and biological activity of northern taiga soils. Statistically significant differences in the total, labile, and microbial carbon pools were observed for the studied soils. Labile and microbial carbon pools in the organic layer (10 cm) of forest podzols amounted to 0.19 and 0.66 t/ha, respectively; those in the organic layer (40 cm) of peat cryozems of flat-topped peat mounds reached 1.24 and 3.20 t/ha, and those in the oligotrophic peat soils (50 cm) of large peat mounds were 2.76 and 1.35 t/ha, respectively. The portion of microbial carbon in the total carbon pool (C_micr/C_tot, %) varied significantly; according to the values of this index, the soils were arranged into the following sequence: oligotrophic peat soil < peat cryozem < podzol.