Pan-genome analysis of 13 Malus accessions reveals structural and sequence variations associated with fruit traits
T Wang, S Duan, C Xu, Y Wang, X Zhang, X Xu… - Nature …, 2023 - nature.com
… sequencing and chromosome conformation capture (Hi-C) … the GS genome assembly reached
the “gold standard” level (LAI … were constructed and sequenced on NovaSeq platform. The …
the “gold standard” level (LAI … were constructed and sequenced on NovaSeq platform. The …
DNA sequencing at 40: past, present and future
… Nucleic-acid sequencing would ideally also capture DNA … -effectively genotyped with
microarrays to facilitate genome-wide … 90), and then the genomes of two anonymous individuals …
microarrays to facilitate genome-wide … 90), and then the genomes of two anonymous individuals …
Current and emerging tools for the recovery of genetic information from post mortem samples: New directions for disaster victim identification
J Watherston, D McNevin, ME Gahan, D Bruce… - Forensic Science …, 2018 - Elsevier
… DNA profiling has emerged as the gold standard for the identification of victims in mass …
for DNA profiling. Furthermore, recent developments now allow a vast array of new genetic …
for DNA profiling. Furthermore, recent developments now allow a vast array of new genetic …
Comparison and imputation-aided integration of five commercial platforms for targeted DNA methylome analysis
… , such as microarrays and next-generation sequencing (NGS) 2,… five platforms in terms of
sequencing output, target capture … the five TBS platforms to gold standard data generated using …
sequencing output, target capture … the five TBS platforms to gold standard data generated using …
Genomic methods take the plunge: recent advances in high-throughput sequencing of marine mammals
… sequencing, array-based sequencing of single nucleotide … of RADseq for identifying genomic
signatures of selection in wild … the use of custom arrays designed to capture and sequence …
signatures of selection in wild … the use of custom arrays designed to capture and sequence …
Molecular, Genetic, and Other Omics Data
… of a small number of anonymous donors. … of the number of times each sequence variant has
been observed in each of … These focus on capturing the representation of various genes in a …
been observed in each of … These focus on capturing the representation of various genes in a …
DNA methylation signatures of Alzheimer's disease neuropathology in the cortex are primarily driven by variation in non-neuronal cell-types
G Shireby, EL Dempster, S Policicchio… - Nature …, 2022 - nature.com
… reduced heterogeneity in BDR, array platform differences, or by … : (1) Braak NFT stage that
captures the progression of NFT … DNA methylation was profiled using the Illumina EPIC array …
captures the progression of NFT … DNA methylation was profiled using the Illumina EPIC array …
Substantial somatic genomic variation and selection for BCOR mutations in human induced pluripotent stem cells
… the value of WGS to fully capture variation at the resolution of … using expression microarray
data from the Illumina HT12v4 … to each sample using an R package (signature.tools.lib) 31 . …
data from the Illumina HT12v4 … to each sample using an R package (signature.tools.lib) 31 . …
[PDF][PDF] Comprehensive and integrative genomic characterization of hepatocellular carcinoma
A Ally, M Balasundaram, R Carlsen, E Chuah, A Clarke… - Cell, 2017 - cell.com
… Mutational Signatures We performed mutational signature … aggregate solution captured the
main features of each platform. The … SNP Array from the Broad Institute copy number platform. …
main features of each platform. The … SNP Array from the Broad Institute copy number platform. …
Multiomics in primary and metastatic breast tumors from the AURORA US network finds microenvironment and epigenetic drivers of metastasis
… methylation microarrays. Expression subtype changes were observed in ~30% of samples …
signature named ‘GP2-immune-metagene’, a signature that we developed to capture immune …
signature named ‘GP2-immune-metagene’, a signature that we developed to capture immune …