[HTML][HTML] Pan-genome analysis of 13 Malus accessions reveals structural and sequence variations associated with fruit traits
T Wang, S Duan, C Xu, Y Wang, X Zhang, X Xu… - Nature …, 2023 - nature.com
… sequencing and chromosome conformation capture (Hi-C) … the GS genome assembly reached
the “gold standard” level (LAI … were constructed and sequenced on NovaSeq platform. The …
the “gold standard” level (LAI … were constructed and sequenced on NovaSeq platform. The …
[PDF][PDF] DNA methylation dynamics and dysregulation delineated by high-throughput profiling in the mouse
… We have developed a mouse DNA methylation array that … Notably, we find that tissue-specific
methylation signatures … assay platform, as observed in our human array studies,20,99 …
methylation signatures … assay platform, as observed in our human array studies,20,99 …
[HTML][HTML] Comprehensive and integrative genomic characterization of hepatocellular carcinoma
…, LR Roberts, Cancer Genome Atlas Research Network - Cell, 2017 - ncbi.nlm.nih.gov
… SNP Array from the Broad Institute copy number platform. … We used cosine similarity to
compare our three signatures … To capture cancer-specific DNA hypermethylation events, we …
compare our three signatures … To capture cancer-specific DNA hypermethylation events, we …
[HTML][HTML] SM-Omics is an automated platform for high-throughput spatial multi-omics
… sequence for capture on a poly(d)T spatially barcoded array (… with similar array design
versions (Visium, 10X Genomics), … when using the ProPlate Multi-Array system with standard …
versions (Visium, 10X Genomics), … when using the ProPlate Multi-Array system with standard …
[HTML][HTML] Substantial somatic genomic variation and selection for BCOR mutations in human induced pluripotent stem cells
… the value of WGS to fully capture variation at the resolution of … using expression microarray
data from the Illumina HT12v4 … to each sample using an R package (signature.tools.lib) 31 . …
data from the Illumina HT12v4 … to each sample using an R package (signature.tools.lib) 31 . …
Comparison and imputation-aided integration of five commercial platforms for targeted DNA methylome analysis
… , such as microarrays and next-generation sequencing (NGS) 2,… five platforms in terms of
sequencing output, target capture … the five TBS platforms to gold standard data generated using …
sequencing output, target capture … the five TBS platforms to gold standard data generated using …
Molecular, Genetic, and Other Omics Data
… of a small number of anonymous donors. … of the number of times each sequence variant has
been observed in each of … These focus on capturing the representation of various genes in a …
been observed in each of … These focus on capturing the representation of various genes in a …
[HTML][HTML] DNA methylation signatures of Alzheimer's disease neuropathology in the cortex are primarily driven by variation in non-neuronal cell-types
G Shireby, EL Dempster, S Policicchio… - Nature …, 2022 - nature.com
… reduced heterogeneity in BDR, array platform differences, or by … : (1) Braak NFT stage that
captures the progression of NFT … DNA methylation was profiled using the Illumina EPIC array …
captures the progression of NFT … DNA methylation was profiled using the Illumina EPIC array …
[HTML][HTML] microRNA-guided diagnostics in clinical samples
… , detection assay variability, a vast array of online resources … involves capturing target miRNAs
in solution using a biotin-… the performance of different miRNA detection platforms, and (v) …
in solution using a biotin-… the performance of different miRNA detection platforms, and (v) …
[PDF][PDF] Computing genomic signatures using de bruijn chains
… regions of conserved or divergent gene order. Genomic signatures work by capturing one or
more such features … We also thank the two anonymous reviewers for their careful feedback. …
more such features … We also thank the two anonymous reviewers for their careful feedback. …