Genome-wide DNA methylation profiling in zebrafish

PJ Murphy, BR Cairns - Methods in Cell Biology, 2016 - Elsevier
DNA methylation in mammals. Here we briefly review the zebrafish model for studying DNA
methylation and describe a series of methods for performing genome-wide DNA methylation

[HTML][HTML] DNA Methylation Profiles of Tph1A and BDNF in Gut and Brain of L. Rhamnosus-Treated Zebrafish

M Cuomo, L Borrelli, R Della Monica, L Coretti… - Biomolecules, 2021 - mdpi.com
… In order to investigate whether probiotic treatment may have an impact on DNA methylation
in gut and brain cells, we took advantage of a Zebrafish experimental model previously …

[HTML][HTML] Profiling DNA methylation patterns of zebrafish liver associated with parental high dietary arachidonic acid

AC Adam, KK Lie, P Whatmore, LM Jakt, M Moren… - PLoS …, 2019 - journals.plos.org
… The gene expression data was obtained from a different cohort of zebrafish than the DNA
methylation data, though the experimental treatment was the same as for the zebrafish in this …

Sex-specific transcription and DNA methylation profiles of reproductive and epigenetic associated genes in the gonads and livers of breeding zebrafish

LV Laing, J Viana, EL Dempster, TMU Webster… - … and Physiology Part A …, 2018 - Elsevier
… Here we report for the first time sexually dimorphic DNA methylation profiles, and associations
between transcription and DNA methylation in the promoters of esr1, amh and dnmt1, …

[HTML][HTML] Unraveling the whole genome DNA methylation profile of zebrafish kidney marrow by Oxford Nanopore sequencing

X Liu, Y Ni, D Wang, S Ye, M Yang, X Sun, AYH Leung… - Scientific data, 2023 - nature.com
… ), the ONT-based methylation profiling can cover more CpG sites (… And the ONT methylation
calling results showed a high … a comprehensive methylation profile for zebrafish KM, paving …

Genomic responses of DNA methylation and transcript profiles in zebrafish cells upon nutrient deprivation stress

X Fan, T Hou, Y Guan, X Li, S Zhang, Z Wang - Science of The Total …, 2020 - Elsevier
… In the present study, we advanced knowledge and understanding of the zebrafish cell
methylome using WGBS to show the genome-wide coalition analyses of DNA methylation and …

[HTML][HTML] A DNA methylation age predictor for zebrafish

B Mayne, D Korbie, L Kenchington, B Ezzy… - Aging (Albany …, 2020 - ncbi.nlm.nih.gov
… we identify DNA methylation biomarkers that accurately predict the age of zebrafish from
caudal fin … measurement of DNA methylation to estimate age with high accuracy and precision. …

DNA methylation and gene expression alterations in zebrafish early-life stages exposed to the antibacterial agent triclosan

E Falisse, B Ducos, PA Stockwell, IM Morison… - Environmental …, 2018 - Elsevier
… of 171 differentially methylated fragments were identified by … mRNA levels and DNA
methylation patterns in introns, … Triclosan alters DNA methylation in zebrafish exposed during …

[HTML][HTML] Comparative epigenomic profiling of the DNA methylome in mouse and zebrafish uncovers high interspecies divergence

C Zhang, Y Hoshida, KC Sadler - Frontiers in Genetics, 2016 - frontiersin.org
… We propose that the high level of DNA methylation in zebrafish is a consequence of this
TE-enriched genome and CpG islands, as a mechanism of limiting transposition. Indeed, we find …

Role of DNA methylation in altered gene expression patterns in adult zebrafish (Danio rerio) exposed to 3, 3', 4, 4', 5-pentachlorobiphenyl (PCB 126)

N Aluru, SI Karchner, KS Krick, W Zhu… - Environmental …, 2018 - academic.oup.com
… changes in DNA methylation concomitant with gene expression patterns in the liver and
brain tissues of zebrafish exposed to PCB126. We hypothesized that DNA methylation changes …