[HTML][HTML] Comparative Analysis Reveals Different Evolutionary Fates and Biological Functions in Wheat Duplicated Genes (Triticum aestivum L.)

L Cui, H Cheng, Z Yang, C Xia, L Zhang, X Kong - Plants, 2023 - mdpi.com
… might be explained by the meiotic homologous recombination in cereals being biased towards
… Although dispersed duplication-derived genes and non-duplicated genes tended to be …

Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae)

J Boutte, J Ferreira de Carvalho… - … and Evolution, 2016 - academic.oup.com
… from NGS data sets and detecting the various expected duplicated gene copies in the …
Homologous sequences from grass sequenced genomes were included in this analysis, with …

[HTML][HTML] Conversion between 100-million-year-old duplicated genes contributes to rice subspecies divergence

C Wei, Z Wang, J Wang, J Teng, S Shen, Q Xiao, S Bao… - BMC genomics, 2021 - Springer
… restrict recombination and inhibit duplicated gene conversion … Homoeologous recombination
as an evolutionary event of … of the homologous genes in each quartet, we characterized the …

Next-generation transcriptome assembly and analysis: Impact of ploidy

A Voshall, EN Moriyama - Methods, 2020 - Elsevier
Duplication of the genes also allows the rapid evolution of the … In allopolyploids,
relative expression levels for duplicated genes (homoeologs) can become unequal (homoeolog

[HTML][HTML] Rapid Genome Evolution and Adaptation of Thlaspi arvense Mediated by Recurrent RNA-Based and Tandem Gene Duplications

Y Hu, X Wu, G Jin, J Peng, R Leng, L Li, D Gui… - Frontiers in Plant …, 2022 - frontiersin.org
… of analysis method for the tandem duplicated genes in SEOs … gene families, we used previously
described transcriptomes of T… the subsequent tandem duplication of homologous genes. …

Extensive changes in gene expression and alternative splicing due to homoeologous exchange in rice segmental allopolyploids

Z Zhang, T Fu, Z Liu, X Wang, H Xun, G Li… - Theoretical and Applied …, 2019 - Springer
… extensive variation in the transcriptome profile induced by … -novelty genes, we performed
gene ontology (GO) analysis … however, the whole genome duplication and subsequent genomic …

Diverse transcriptional patterns of homoeologous recombinant transcripts in triploid fish (Cyprinidae)

L Ren, X Zhang, J Li, X Yan, X Gao, J Cui… - Science China Life …, 2021 - Springer
… Similar to gene duplication, sequence divergence and HR … Default parameters were used
in this analysis. Furthermore, … RNA transcriptomes reveal insights into dynamic homoeolog

[HTML][HTML] Integrative analysis of genomic alterations in triple-negative breast cancer in association with homologous recombination deficiency

M Kawazu, S Kojima, T Ueno, Y Totoki… - PLoS …, 2017 - journals.plos.org
… sequencing together with transcriptome and whole exome … (SVs) with relative enrichment
for tandem duplication. Clonal … Second, our data indicated the evolutionary pathway of TNBC …

Whole-Genome Duplication Reshaped Adaptive Evolution in a Relict Plant Species, Cyclocarya Paliurus

Y Qu, X Shang, Z Zeng, Y Yu, G Bian… - Genomics …, 2023 - academic.oup.com
… paliurus, we performed a comparative transcriptome analysisgenes were enriched in
regulation of DNA recombination, … Our study identified two homologous genes in the CYP716A …

An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication

E Parey, A Louis, J Montfort, Y Guiguen… - Genome …, 2022 - genome.cshlp.org
genetic divergence of duplicated genes (cytological and … Localized homeologous
exchanges, in which sequences from … We focus our analysis at the Osteoglossiformes/Clupeocephala …