[HTML][HTML] The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection

J Yang, D Liu, X Wang, C Ji, F Cheng, B Liu, Z Hu… - Nature …, 2016 - nature.com
… , whereas one of the two transcriptomes from the resynthesized B. … genes evolved more
rapidly than did the neutral genes, with … recombination rate less than 0.001 were lumped into a …

[HTML][HTML] Molecular characterization, gene evolution, and expression analysis of the fructose-1, 6-bisphosphate aldolase (FBA) gene family in wheat (Triticum aestivum …

GY Lv, XG Guo, LP Xie, CG Xie, XH Zhang… - Frontiers in Plant …, 2017 - frontiersin.org
… of these genes in 12 chromosomes of four homologous groups. … based on microarray and
transcriptome databases suggested … -genome duplication and segmental duplication may have …

Homoeologous chromosome pairing across the eukaryote phylogeny

AL Grusz, EM Sigel, C Witherup - Molecular Phylogenetics and Evolution, 2017 - Elsevier
… In this review, we examine homoeologous recombination as … Meiosis-associated MMR
proteins are best characterized in … focused on premeiotic genome duplication, will surely expand …

[HTML][HTML] Integrative gene duplication and genome-wide analysis as an approach to facilitate wheat reverse genetics: An example in the TaCIPK family

J Feng, Q Zhang, Y Wang, Y Guan, R Wang… - Journal of Advanced …, 2023 - Elsevier
… relied on homologous cloning and genome-wide analysis (GWA) of a given … duplicated
genes and loci with tandemly duplicated copies, allowing us to link TaCIPKs/TaCBLs evolution

[HTML][HTML] Open-Bud Duplicate Loci Are Identified as MML10s, Orthologs of MIXTA-Like Genes on Homologous Chromosomes of Allotetraploid Cotton

W Chen, J Yao, Y Li, S Zhu, Y Guo, S Fang… - Frontiers in Plant …, 2020 - frontiersin.org
transcriptome analysis showed that some of the MYB genes … for artificial selection and
evolution of a new function. The … of the ob genes, so no genetic recombination would occur during …

[HTML][HTML] Gene duplication analysis reveals no ancient whole genome duplication but extensive small-scale duplications during genome evolution and adaptation of …

S Wang, X Zhu, X Cai - Frontiers in Cellular and Infection …, 2017 - frontiersin.org
… To assess its potential effect on the estimation of origins of duplicated genes in this study,
we … Interestingly, some specific homologous genomic regions are highly duplicated within a …

Repeated whole-genome duplication, karyotype reshuffling, and biased retention of stress-responding genes in Buckler mustard

C Geiser, T Mandáková, N Arrigo, MA Lysak… - The Plant …, 2016 - academic.oup.com
… driven the retention of duplicated genes after recurrent WGDs. … Homoeologous Arabidopsis
thaliana BAC contigs indeed … by the analysis of the Buckler mustard transcriptome that was …

A phylogenomic assessment of ancient polyploidy and genome evolution across the Poales

MR McKain, H Tang, JR McNeal… - … and evolution, 2016 - academic.oup.com
… among those with duplicate genes that persisted following these … Further, for the species tree
analysis we reduced certain … of incomplete gene sampling in the transcriptome assemblies. …

[HTML][HTML] Complex analysis of retroposed genes' contribution to human genome, proteome and transcriptome

MR Kubiak, MW Szcześniak, I Makałowska - Genes, 2020 - mdpi.com
Gene duplication is a major driver of organismal evolution. … and novel genes resulting from
RNA-mediated duplication [13]; to the … Such non-allelic homologous recombination between a …

Homoeologous exchanges cause extensive dosage‐dependent gene expression changes in an allopolyploid crop

A Lloyd, A Blary, D Charif, C Charpentier… - New …, 2018 - Wiley Online Library
… a specific transcriptome profile. For this, we assessed whether the duplicated and lost … ,
genome-wide analysis that enables the direct effect of homoeologous exchanges (HEs) on …