Expression patterns and functional divergence of homologous genes accompanied by polyploidization in cotton (Gossypium hirsutum L.)

Z Peng, H Cheng, G Sun, Z Pan, X Wang… - Science China Life …, 2020 - Springer
… Specifically, ELD-A/D and homologous expression bias in the allopolyploid cotton were …
Geneexpression novelty in allopolyploid cotton: a proteomic perspective. Genetics 200, 91–…

Cotton as a model for polyploidy and fiber development study

VS Kamburova, IB Salakhutdinov… - Model Organisms in …, 2021 - books.google.com
gene expression in both At-and Dt-subgenome [1, 40, 48, 55]. Despite the fact that major
genes for fiber quality were introduced into allopolyploids … The results of the study of proteome

Transgressive and subgenome expression level dominance and co-expression network analyses at the early fiber development in allopolyploid Gossypium

A Xing, X Zhang, J Wang, S He, MF Nazir… - Industrial Crops and …, 2024 - Elsevier
… and proteome sequencing to characterize the gene expression … From a global perspective,
our findings were in line with those of … cotton species and integrated global gene expression

[HTML][HTML] An insight into the gene expression evolution in Gossypium species based on the leaf transcriptomes

Y Wu, R Sun, T Huan, Y Zhao, D Yu, Y Sun - BMC genomics, 2024 - Springer
… This phenomenon was similar to a previous proteomics analysis in cotton fiber, which
showed that the fiber proteomes of AD 1 and AD 2 were closely related to the parental A- and D-…

Polyploidy and the proteome

DE Soltis, BB Misra, S Shan, S Chen… - … )-Proteins and Proteomics, 2016 - Elsevier
… of shifts in gene content, alterations in gene expression, and … Allopolyploidy can result in
gene expression changes relative to … proteomic evolutionary implications (eg, additivity, novelty, …

[HTML][HTML] Comparative proteomic analyses of Asian cotton ovules with attached fibers in the early stages of fiber elongation process

B Zhang, SJ Du, J Hu, D Miao, JY Liu - Proteome Science, 2016 - Springer
… comparative proteomic approach to profile dynamic proteomes of diploid Asian cotton ovules
with … the first evidence that the two allopolyploid species have achieved superficially similar …

Homoeologs in Allopolyploids: Navigating Redundancy as Both an Evolutionary Opportunity and a Technical Challenge-A Transcriptomics Perspective

G Aufiero, C Fruggiero, D D'Angelo, N D'Agostino - 2024 - preprints.org
novelties, and environmental adaptations exhibited by … genome dominance in allopolyploid
cotton were conducted … to define gene expression profiles in allopolyploids and appropriately …

Extensive changes in gene expression and alternative splicing due to homoeologous exchange in rice segmental allopolyploids

Z Zhang, T Fu, Z Liu, X Wang, H Xun, G Li… - Theoretical and Applied …, 2019 - Springer
… to rapidly generate novelty in gene expression and … allopolyploids and relevant to allopolyploid
crop breeding. … regulating gene expression and generates transcriptome and proteome

Evolutionary dynamics of chromatin structure and duplicate gene expression in diploid and allopolyploid cotton

G Hu, CE Grover, DL Vera, PY Lung… - Molecular Biology …, 2024 - academic.oup.com
… also alter epigenetic dynamics, gene expression, the proteome, and molecular networks. …
regulation in allopolyploid cotton. Taken together, our study provides a detailed view of the …

Homoeologous gene expression and co-expression network analyses and evolutionary inference in allopolyploids

G Hu, CE Grover, MA Arick, M Liu… - Briefings in …, 2021 - academic.oup.com
gene expression and co-expression networks. A ground-truth, in silico dataset of allopolyploid
cotton (AD) … This approach allowed us to evaluate the accuracy of ‘homoeolog’ expression …