… testing, and used the remaining PASs with 10-fold cross validation to learn the optimal hyper
parameters for each prediction model. We used both accuracy and the area under the ROC …

… of tissue-specific gene expressions and differences across tissues and cell types. Our
genome-wide … to our research, investigate alternative polyadenylation in tissue specific manner in …

… These findings provide a genome-wide landscape of lncRNAs in L. chinense. … This study
also identified two hub TFs and 18 tissue-specific hub genes with important research value that …

… Identification of poly(A) sites (pAs) on a genome-wide scale … of a single gene, termed
alternative polyadenylation (APA), can … for pA prediction, including non-3′ UTR, tissue-specific, …

… predict tissue-specific polyadenylation and splicing patterns. … computational models are
trained on genome-wide patterns … data to infer accurate predictive models of complex outcomes. …

… We acknowledge their limitation in showing genome-wide tumor-specific APA regulations.
Still, the genes inspected in our study reveal that APA regulation in cancer is more complex …

… model that can predict the tissue-specific strength of a … that can predict alternative
polyadenylation patterns from transcript … In this work, we apply the predictive model to multiple …

… capture 3′ ends of mRNAs have been developed for genome-wide profiling of poly(A) sites,
such … APA has emerged as a widespread mechanism highly modulated in tissue-specific or …

… Alternative polyadenylation (polyA) sites near the 3 ′ end of a … As alternative polyA sites
are common in mammalian genes, … the tissue-specific polyA site prediction model with the non-…

Alternative polyadenylation (APA) is a major driver of transcriptome diversity in human cells.
Here, we use deep learning to predict APA from DNA sequence alone. We trained our …