Genomic variations combined with epigenetic modifications rewire open chromatin in rice
M Li, Y Feng, Q Han, Y Yang, Y Shi, D Zheng… - Plant …, 2023 - academic.oup.com
… In conclusion, our study provides a genome-wide analysis that allows us to … changes
alone or combined with epigenetic modifications. Importantly, it can be extended to wider rice …
alone or combined with epigenetic modifications. Importantly, it can be extended to wider rice …
[HTML][HTML] Pup1 QTL regulates gene expression through epigenetic modification of DNA under phosphate starvation stress in rice
… Using whole-genome bisulfite sequencing of a pair of rice [Pusa-44 and its near-isogenic …
We observed 13–15% of total cytosines to be methylated in the rice genome, which increased …
We observed 13–15% of total cytosines to be methylated in the rice genome, which increased …
DNA methylome analysis provides insights into gene regulatory mechanism for better performance of rice under fluctuating environmental conditions: epigenomics of …
S Kumar, K Seem, S Kumar, A Singh, SG Krishnan… - Planta, 2024 - Springer
… Dynamic epigenetic changes are necessary for appropriate … from the database for Rice
Genome Annotation Project. … Our expression correlation/interaction network analysis of the genes …
Genome Annotation Project. … Our expression correlation/interaction network analysis of the genes …
[图书][B] Insights into the Role of Chromatin Structure on Transcriptional Variation across Genotype, Environment, and Developmental Stage in Oryza sativa
MT McGowan - 2022 - search.proquest.com
… recently, obtaining high-resolution predictions of chromatin … low external interaction do
appear to be a common genome-wide … Histone Modifications in Rice Histone modifications have …
appear to be a common genome-wide … Histone Modifications in Rice Histone modifications have …
Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence
… histone deacylation activities of several rice HDACs. Our results indicate that Kbu and Kcr
are robust histone modification … of histone Kbu and Kcr modifications in the rice genome. a …
are robust histone modification … of histone Kbu and Kcr modifications in the rice genome. a …
Epigenetic regulation and epigenomic landscape in rice
X Deng, X Song, L Wei, C Liu, X Cao - National Science Review, 2016 - academic.oup.com
… to construct high-resolution maps of DNA methylation of rice … ) to map the distribution of four
euchromatic histone modification … (eTM) and block the interaction between miRNAs and their …
euchromatic histone modification … (eTM) and block the interaction between miRNAs and their …
Integrated 3D genome, epigenome and transcriptome analyses reveal transcriptional coordination of circadian rhythm in rice
Y Zhang, G Chen, L Deng, B Gao, J Yang… - Nucleic Acids …, 2023 - academic.oup.com
… , a high-resolution three-dimensional (3D) genome map of … Our detailed analysis of the
interplay between 3D genome … oscillating genes and epigenetic modifications in different light …
interplay between 3D genome … oscillating genes and epigenetic modifications in different light …
Dysfunction of duplicated pair rice histone acetyltransferases causes segregation distortion and an interspecific reproductive barrier
B Liao, YH Xiang, Y Li, KY Yang, JX Shan… - Nature …, 2024 - nature.com
… activation via genome-wide histone modification. The … component of the reproducible
interaction. Furthermore, application of … populations for high-resolution mapping of HWS1/2. NIL(…
interaction. Furthermore, application of … populations for high-resolution mapping of HWS1/2. NIL(…
[PDF][PDF] Haplotype mapping of H3K27me3-associated chromatin interactions defines topological regulation of gene silencing in rice
W Ouyang, X Zhang, M Guo, J Wang, X Wang, R Gao… - Cell Reports, 2023 - cell.com
… Histone modification H3K27me3 is an important chromatin mark that plays vital roles in …
Here, we construct high-resolution 3D genome maps using long-read chromatin interaction …
Here, we construct high-resolution 3D genome maps using long-read chromatin interaction …
[PDF][PDF] Genomic and Epigenomic Basis of Transgressive Segregation in Rice
A Kitazumi - 2019 - ttu-ir.tdl.org
… to complementation and epistatic interaction, the precise molecular underpinnings have not
been fully elucidated, particularly the potential contributions of epigenetic regulation. In the …
been fully elucidated, particularly the potential contributions of epigenetic regulation. In the …