Genomic variations combined with epigenetic modifications rewire open chromatin in rice

M Li, Y Feng, Q Han, Y Yang, Y Shi, D Zheng… - Plant …, 2023 - academic.oup.com
… In conclusion, our study provides a genome-wide analysis that allows us to … changes
alone or combined with epigenetic modifications. Importantly, it can be extended to wider rice

[HTML][HTML] Pup1 QTL regulates gene expression through epigenetic modification of DNA under phosphate starvation stress in rice

S Kumar, K Seem, S Kumar, KK Vinod… - Frontiers in Plant …, 2022 - frontiersin.org
… Using whole-genome bisulfite sequencing of a pair of rice [Pusa-44 and its near-isogenic …
We observed 13–15% of total cytosines to be methylated in the rice genome, which increased …

DNA methylome analysis provides insights into gene regulatory mechanism for better performance of rice under fluctuating environmental conditions: epigenomics of …

S Kumar, K Seem, S Kumar, A Singh, SG Krishnan… - Planta, 2024 - Springer
… Dynamic epigenetic changes are necessary for appropriate … from the database for Rice
Genome Annotation Project. … Our expression correlation/interaction network analysis of the genes …

[图书][B] Insights into the Role of Chromatin Structure on Transcriptional Variation across Genotype, Environment, and Developmental Stage in Oryza sativa

MT McGowan - 2022 - search.proquest.com
… recently, obtaining high-resolution predictions of chromatin … low external interaction do
appear to be a common genome-wide … Histone Modifications in Rice Histone modifications have …

Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence

Y Lu, Q Xu, Y Liu, Y Yu, ZY Cheng, Y Zhao, DX Zhou - Genome biology, 2018 - Springer
histone deacylation activities of several rice HDACs. Our results indicate that Kbu and Kcr
are robust histone modification … of histone Kbu and Kcr modifications in the rice genome. a …

Epigenetic regulation and epigenomic landscape in rice

X Deng, X Song, L Wei, C Liu, X Cao - National Science Review, 2016 - academic.oup.com
… to construct high-resolution maps of DNA methylation of rice … ) to map the distribution of four
euchromatic histone modification … (eTM) and block the interaction between miRNAs and their …

Integrated 3D genome, epigenome and transcriptome analyses reveal transcriptional coordination of circadian rhythm in rice

Y Zhang, G Chen, L Deng, B Gao, J Yang… - Nucleic Acids …, 2023 - academic.oup.com
… , a high-resolution three-dimensional (3D) genome map of … Our detailed analysis of the
interplay between 3D genome … oscillating genes and epigenetic modifications in different light …

Dysfunction of duplicated pair rice histone acetyltransferases causes segregation distortion and an interspecific reproductive barrier

B Liao, YH Xiang, Y Li, KY Yang, JX Shan… - Nature …, 2024 - nature.com
… activation via genome-wide histone modification. The … component of the reproducible
interaction. Furthermore, application of … populations for high-resolution mapping of HWS1/2. NIL(…

[PDF][PDF] Haplotype mapping of H3K27me3-associated chromatin interactions defines topological regulation of gene silencing in rice

W Ouyang, X Zhang, M Guo, J Wang, X Wang, R Gao… - Cell Reports, 2023 - cell.com
Histone modification H3K27me3 is an important chromatin mark that plays vital roles in …
Here, we construct high-resolution 3D genome maps using long-read chromatin interaction

[PDF][PDF] Genomic and Epigenomic Basis of Transgressive Segregation in Rice

A Kitazumi - 2019 - ttu-ir.tdl.org
… to complementation and epistatic interaction, the precise molecular underpinnings have not
been fully elucidated, particularly the potential contributions of epigenetic regulation. In the …