Prediction of protein–protein interactions by evidence combining methods
JW Chang, YQ Zhou, MT Ul Qamar, LL Chen… - International journal of …, 2016 - mdpi.com
… of multi-dimensional evidence, for designing the strategies to predict novel interactions,
and for making the results consistent with the increase of prediction coverage and accuracy. …
and for making the results consistent with the increase of prediction coverage and accuracy. …
A survey on computational models for predicting protein–protein interactions
… We explain how the performance of PPI prediction can be improved if these issues are … The
robustness of RWS could be decreased by the simple cut-off-based strategy used to maintain …
robustness of RWS could be decreased by the simple cut-off-based strategy used to maintain …
Assessment of community efforts to advance network-based prediction of protein–protein interactions
… To better demonstrate the performance variability of the different methods, we ranked those
… to guide protein–protein interaction assays, by prioritizing interactions with a high predicted …
… to guide protein–protein interaction assays, by prioritizing interactions with a high predicted …
Evolution of sequence-based bioinformatics tools for protein-protein interaction prediction
… are integrated by using various statistical strategies such as logistic … used in bioinformatics
research to enhance the prediction … improvement of plant-pathogen protein-protein interaction …
research to enhance the prediction … improvement of plant-pathogen protein-protein interaction …
Recent advances in predicting protein–protein interactions with the aid of artificial intelligence algorithms
… supplement and guide wet-laboratory's experimental work [3]… of reported PPIs has increased
substantially. Especially, the … binding interface prediction method developed by modifying …
substantially. Especially, the … binding interface prediction method developed by modifying …
Automated feature engineering improves prediction of protein–protein interactions
… In this work, we relied on three strategies to improve prediction … , ie, submodeling with three
feature groups; and (3) meta-learner … modifications of EGFR corroborates our predictions by …
feature groups; and (3) meta-learner … modifications of EGFR corroborates our predictions by …
Learning spatial structures of proteins improves protein–protein interaction prediction
… protein structures improves the performance of protein–protein interaction (PPI) prediction. …
In the future, we will try to apply the new strategy of protein representation learning method …
In the future, we will try to apply the new strategy of protein representation learning method …
Better link prediction for protein-protein interaction networks
HY Yuen, J Jansson - 2020 IEEE 20th International Conference …, 2020 - ieeexplore.ieee.org
… In more advanced use cases, analysis in targeting disruptive PPIs can even introduce new
cancer therapeutic strategies [7]. The basis of meaningful and comprehensive discoveries is …
cancer therapeutic strategies [7]. The basis of meaningful and comprehensive discoveries is …
A machine learning strategy for predicting localization of post-translational modification sites in protein-protein interacting regions
… Using two of the comprehensive databases for protein-protein interaction and protein
modification site … Obviously, the predictive performance was poor, essentially being no better than …
modification site … Obviously, the predictive performance was poor, essentially being no better than …
A high efficient biological language model for predicting protein–protein interactions
… -based strategies. … an improvement in prediction accuracy compared to the 3-mers-based
methods. Specifically, there was approximately a 5% increase in accuracy in comparison with 3…
methods. Specifically, there was approximately a 5% increase in accuracy in comparison with 3…