Prediction of proteinprotein interactions by evidence combining methods

JW Chang, YQ Zhou, MT Ul Qamar, LL Chen… - International journal of …, 2016 - mdpi.com
… of multi-dimensional evidence, for designing the strategies to predict novel interactions,
and for making the results consistent with the increase of prediction coverage and accuracy. …

A survey on computational models for predicting proteinprotein interactions

L Hu, X Wang, YA Huang, P Hu… - Briefings in …, 2021 - academic.oup.com
… We explain how the performance of PPI prediction can be improved if these issues are … The
robustness of RWS could be decreased by the simple cut-off-based strategy used to maintain …

Assessment of community efforts to advance network-based prediction of proteinprotein interactions

XW Wang, L Madeddu, K Spirohn, L Martini… - Nature …, 2023 - nature.com
… To better demonstrate the performance variability of the different methods, we ranked those
… to guide proteinprotein interaction assays, by prioritizing interactions with a high predicted

Evolution of sequence-based bioinformatics tools for protein-protein interaction prediction

M Khatun, W Shoombuatong, MM Hasan… - Current …, 2020 - ingentaconnect.com
… are integrated by using various statistical strategies such as logistic … used in bioinformatics
research to enhance the predictionimprovement of plant-pathogen protein-protein interaction

Recent advances in predicting proteinprotein interactions with the aid of artificial intelligence algorithms

S Li, S Wu, L Wang, F Li, H Jiang, F Bai - Current Opinion in Structural …, 2022 - Elsevier
… supplement and guide wet-laboratory's experimental work [3]… of reported PPIs has increased
substantially. Especially, the … binding interface prediction method developed by modifying

Automated feature engineering improves prediction of proteinprotein interactions

N Sumonja, B Gemovic, N Veljkovic, V Perovic - Amino Acids, 2019 - Springer
… In this work, we relied on three strategies to improve prediction … , ie, submodeling with three
feature groups; and (3) meta-learner … modifications of EGFR corroborates our predictions by …

Learning spatial structures of proteins improves proteinprotein interaction prediction

B Song, X Luo, X Luo, Y Liu, Z Niu… - Briefings in …, 2022 - academic.oup.com
… protein structures improves the performance of proteinprotein interaction (PPI) prediction. …
In the future, we will try to apply the new strategy of protein representation learning method …

Better link prediction for protein-protein interaction networks

HY Yuen, J Jansson - 2020 IEEE 20th International Conference …, 2020 - ieeexplore.ieee.org
… In more advanced use cases, analysis in targeting disruptive PPIs can even introduce new
cancer therapeutic strategies [7]. The basis of meaningful and comprehensive discoveries is …

A machine learning strategy for predicting localization of post-translational modification sites in protein-protein interacting regions

T Saethang, DM Payne, Y Avihingsanon, T Pisitkun - BMC bioinformatics, 2016 - Springer
Using two of the comprehensive databases for protein-protein interaction and protein
modification site … Obviously, the predictive performance was poor, essentially being no better than …

A high efficient biological language model for predicting proteinprotein interactions

Y Wang, ZH You, S Yang, X Li, TH Jiang, X Zhou - Cells, 2019 - mdpi.com
… -based strategies. … an improvement in prediction accuracy compared to the 3-mers-based
methods. Specifically, there was approximately a 5% increase in accuracy in comparison with 3