Gene-tree reconciliation with MUL-trees to resolve polyploidy events
… Incongruence caused by error in gene tree inference or incomplete lineage sorting (ILS) can
be … The inferred MUL-tree and species network for the baker's yeast data. BY: baker's yeast …
be … The inferred MUL-tree and species network for the baker's yeast data. BY: baker's yeast …
Dating the Species Network: Allopolyploidy and Repetitive DNA Evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae)
J Mccann, TS Jang, J Macas… - Systematic …, 2018 - academic.oup.com
… to the same event), we can infer the age of allopolyploids within the … tree prior with constant
population size was used for the gene trees, while the Yule prior was used for the species tree…
population size was used for the gene trees, while the Yule prior was used for the species tree…
Phylogenetics of allopolyploids
B Oxelman, AK Brysting, GR Jones… - Annual Review of …, 2017 - annualreviews.org
… from several species to infer gene and/or species trees or networks. … gene trees, which are
then used as data for species tree inference, or make simultaneous coestimation of gene and …
then used as data for species tree inference, or make simultaneous coestimation of gene and …
Genomic histories of polyploidy, diversification, and admixture in a Hawaiian plant radiation
C Lindqvist, C Tomlin, S Rajaraman, J Sebesta… - 2023 - researchsquare.com
… ) and these other apparent high-polyploid taxa are interspersed … same progenitor inferred
301 for the WNA Stachys/Hawaiian mint … the Hawaiian genera and closest 408 North American …
301 for the WNA Stachys/Hawaiian mint … the Hawaiian genera and closest 408 North American …
Relationships and genome evolution of polyploid Salix species revealed by RAD sequencing data
ND Wagner, L He, E Hörandl - bioRxiv, 2019 - biorxiv.org
… can be used for gene tree and species tree reconstruction. The … We inferred phylogenetic
relationships on concatenated … of the origin on the high polyploid willows remain elusive. Hence…
relationships on concatenated … of the origin on the high polyploid willows remain elusive. Hence…
Inferring Patterns of Hybridization and Polyploidy in the Plant Genus Penstemon (Plantaginaceae)
… angiosperms that has rapidly radiated across North America. … amplicons, we inferred species
trees and networks for 38 … resampling, the gene tree contributions to the species-level splits …
trees and networks for 38 … resampling, the gene tree contributions to the species-level splits …
Allopolyploid origin and diversification of the Hawaiian endemic mints
CM Tomlin, S Rajaraman, JT Sebesta… - Nature …, 2024 - nature.com
… among the Hawaiian mints and their closest North American … these other apparent high-polyploid
taxa are interspersed … the same progenitor inferred for the WNA Stachys/Hawaiian mint …
taxa are interspersed … the same progenitor inferred for the WNA Stachys/Hawaiian mint …
Autopolyploidy, allopolyploidy, and phylogenetic networks with horizontal arcs
KT Huber, LJ Maher - Bulletin of Mathematical Biology, 2023 - Springer
… In the case of AlloPPnet, a phylogenetic network is inferred using, … tree for PADRE is to try
and construct it as a consensus multiple-labelled tree from a set of multiple-labelled gene trees…
and construct it as a consensus multiple-labelled tree from a set of multiple-labelled gene trees…
[HTML][HTML] Phylogenomic relationships and evolution of polyploid Salix species revealed by RAD sequencing data
ND Wagner, L He, E Hörandl - Frontiers in Plant Science, 2020 - frontiersin.org
… We inferred phylogenetic relationships on concatenated … the necessity of sampling the
gene trees at each locus. This is … on the origin on the high polyploid willows are necessary. …
gene trees at each locus. This is … on the origin on the high polyploid willows are necessary. …
Revisiting the bicontinental allopolyploid origin of Australasian Lepidium species with amplicon sequencing of 15 nuclear genes
RD Smissen, S Walker, PB Heenan - Plant Systematics and Evolution, 2024 - Springer
… and clade C species are sister to North American species. In … in a group of high polyploid
Lepidium species. It is possible … split information from multi-label gene trees we present has a …
Lepidium species. It is possible … split information from multi-label gene trees we present has a …