… framework with advanced methods and tools to analyze behavioral properties (… models
(Section 4). Finally, we illustrate these assets on T cell signaling and cell cycle control networks (…

… signaling pathways and basic modeling techniques. Then, we introduce Petri nets and explain
analysis and simulation techniques that are, … tational model of intracellular signaling and …

… transduction pathways: multistep sequences of intracellular signaling events … modeling
approaches is not exhaustive: in limited space, we make no mention of Boolean, semi-quantitative…

… for improving crop models with respect to YV. As expected, our method confirms that current
modeling approaches have … Thus our approach can be seen as a cross-validation of existing …

… modeling approaches and point out outstanding questions in which computational modeling
… Here, we review such modeling approaches on (partial) EMT and how they have helped to …

… , and necroptosis in cellular signaling pathways initiated by … modeling approaches, such as,
eg, an ODE-based model of the NF-… Here, we developed a semi-quantitative PN model and …

… The purpose of this section is to present in a schematic, and therefore somewhat caricatural,
manner the two competing formal modeling approaches that will be used in this thesis and …

… to analyze complex socio‐technical systems to improve safety levels. This review article …
of current literature focused on semi‐quantitative and quantitative methods employed for quanti…

… Also, the qualitative modeling approaches … analysis of cellular signaling or regulatory
networks (see for example [63, 89]). The study in [93] introduced scalable qualitative approach for …

… modelling—is limited to qualitative or semi-quantitative simulation methods at the genome
scale. … -free model creation and simulation method for models of signal transduction. Unique …