[HTML][HTML] Plant phylogenomics based on genome-partitioning strategies: Progress and prospects
… of whole-genome sequencing strategies in the fields of plant … Sequencing the plastid genome
was the most common … in evolutionary and comparative genomics and will greatly benefit …
was the most common … in evolutionary and comparative genomics and will greatly benefit …
Plastome phylogenetics: 30 years of inferences into plant evolution
… site analyses to whole plastid genome sequences, our … trees are generated for comparison
with plastid trees, we are likely … this prospect as both a challenge to clarifying phylogeny and …
with plastid trees, we are likely … this prospect as both a challenge to clarifying phylogeny and …
Plastogenomics provides a tool to study phylogenetic interrelationships of monilophytes: a review
… In the recent years, phylogenomics based on chloroplast genomes has … plastid genomes
and comparisons of gene content, gene arrangement, gene expression, and gene sequences …
and comparisons of gene content, gene arrangement, gene expression, and gene sequences …
Strategies for complete plastid genome sequencing
AD Twyford, RW Ness - Molecular ecology resources, 2017 - Wiley Online Library
… interest in plastid genome sequencing, in conjunction with improved sequencing techniques
… throughput, and automated assembly pipelines, make the prospect of plastid sequences for …
… throughput, and automated assembly pipelines, make the prospect of plastid sequences for …
Comparative plastome genomics and phylogenetic analyses of Liliaceae
RS Lu, T Yang, Y Chen, SY Wang… - Botanical Journal of …, 2021 - academic.oup.com
… Here, nine newly sequenced plastomes for nine Liliaceae … a total of 86 complete plastid
genome sequences covering all 15 … Overall, our results will provide a robust phylogenomic …
genome sequences covering all 15 … Overall, our results will provide a robust phylogenomic …
Comparative Analysis the Complete Chloroplast Genomes of Nine Musa Species: Genomic Features, Comparative Analysis, and Phylogenetic Implications
… We also performed phylogenetic analyses using chloroplast genome sequences from other
… of angiosperms has made essential contributions to the study of phylogeny and the analysis …
… of angiosperms has made essential contributions to the study of phylogeny and the analysis …
… recalcitrant clades in the Pantropical Ochnaceae: insights from comparative phylogenomics of plastome and nuclear genomic data derived from targeted sequencing
… Plastid DNA sequence data have been traditionally widely used in plant phylogenetics
because of the high copy number of plastids, … In the present study, we evaluate the utility of the …
because of the high copy number of plastids, … In the present study, we evaluate the utility of the …
Plastome engineering in vegetable crops: current status and future prospects
R Yarra - Molecular Biology Reports, 2020 - Springer
… plastid genome sequence, the tobacco plastid genome was used as a reference genome
for amplifying the native carrot plastid sequences … Carrot-specific chloroplast transformation …
for amplifying the native carrot plastid sequences … Carrot-specific chloroplast transformation …
Comparative Analysis of the Complete Plastid Genome of Five Bupleurum Species and New Insights into DNA Barcoding and Phylogenetic Relationship
J Li, DF Xie, XL Guo, ZY Zheng, XJ He, SD Zhou - Plants, 2020 - mdpi.com
… phylogeny more accurately. In recent years, comparative analysis of the complete plastid
genome … In our study, we used the NGS to obtain the complete plastid DNA sequences of two …
genome … In our study, we used the NGS to obtain the complete plastid DNA sequences of two …
Comparative analyses of 3,654 plastid genomes unravel insights into evolutionary dynamics and phylogenetic discordance of green plants
… plastid genomes of plants. Until January 2021, over 3,823 complete plastid genome sequences
… Plastid phylogenomic tree inferred based on the matrix nt12 of 72 protein-coding genes …
… Plastid phylogenomic tree inferred based on the matrix nt12 of 72 protein-coding genes …