[HTML][HTML] Plant phylogenomics based on genome-partitioning strategies: Progress and prospects

X Yu, D Yang, C Guo, L Gao - Plant diversity, 2018 - Elsevier
… of whole-genome sequencing strategies in the fields of plant … Sequencing the plastid genome
was the most common … in evolutionary and comparative genomics and will greatly benefit …

Plastome phylogenetics: 30 years of inferences into plant evolution

MA Gitzendanner, PS Soltis, TS Yi, DZ Li… - Advances in botanical …, 2018 - Elsevier
… site analyses to whole plastid genome sequences, our … trees are generated for comparison
with plastid trees, we are likely … this prospect as both a challenge to clarifying phylogeny and …

Plastogenomics provides a tool to study phylogenetic interrelationships of monilophytes: a review

A Kumar, P Giri, PL Uniyal - Ferns: Biotechnology, Propagation, Medicinal …, 2022 - Springer
… In the recent years, phylogenomics based on chloroplast genomes has … plastid genomes
and comparisons of gene content, gene arrangement, gene expression, and gene sequences

Strategies for complete plastid genome sequencing

AD Twyford, RW Ness - Molecular ecology resources, 2017 - Wiley Online Library
… interest in plastid genome sequencing, in conjunction with improved sequencing techniques
… throughput, and automated assembly pipelines, make the prospect of plastid sequences for …

Comparative plastome genomics and phylogenetic analyses of Liliaceae

RS Lu, T Yang, Y Chen, SY Wang… - Botanical Journal of …, 2021 - academic.oup.com
… Here, nine newly sequenced plastomes for nine Liliaceae … a total of 86 complete plastid
genome sequences covering all 15 … Overall, our results will provide a robust phylogenomic

Comparative Analysis the Complete Chloroplast Genomes of Nine Musa Species: Genomic Features, Comparative Analysis, and Phylogenetic Implications

W Song, C Ji, Z Chen, H Cai, X Wu, C Shi… - Frontiers in Plant …, 2022 - frontiersin.org
… We also performed phylogenetic analyses using chloroplast genome sequences from other
… of angiosperms has made essential contributions to the study of phylogeny and the analysis …

… recalcitrant clades in the Pantropical Ochnaceae: insights from comparative phylogenomics of plastome and nuclear genomic data derived from targeted sequencing

JV Schneider, J Paule, T Jungcurt, D Cardoso… - Frontiers in plant …, 2021 - frontiersin.org
Plastid DNA sequence data have been traditionally widely used in plant phylogenetics
because of the high copy number of plastids, … In the present study, we evaluate the utility of the …

Plastome engineering in vegetable crops: current status and future prospects

R Yarra - Molecular Biology Reports, 2020 - Springer
plastid genome sequence, the tobacco plastid genome was used as a reference genome
for amplifying the native carrot plastid sequences … Carrot-specific chloroplast transformation …

Comparative Analysis of the Complete Plastid Genome of Five Bupleurum Species and New Insights into DNA Barcoding and Phylogenetic Relationship

J Li, DF Xie, XL Guo, ZY Zheng, XJ He, SD Zhou - Plants, 2020 - mdpi.com
phylogeny more accurately. In recent years, comparative analysis of the complete plastid
genome … In our study, we used the NGS to obtain the complete plastid DNA sequences of two …

Comparative analyses of 3,654 plastid genomes unravel insights into evolutionary dynamics and phylogenetic discordance of green plants

T Yang, SK Sahu, L Yang, Y Liu, W Mu, X Liu… - Frontiers in Plant …, 2022 - frontiersin.org
plastid genomes of plants. Until January 2021, over 3,823 complete plastid genome sequences
Plastid phylogenomic tree inferred based on the matrix nt12 of 72 protein-coding genes …