Development of a simple and efficient method of harvesting and lysing adherent mammalian cells for chemical isotope labeling LC-MS-based cellular metabolomics

X Luo, X Gu, L Li - Analytica Chimica Acta, 2018 - Elsevier
… extracts was used to compare the overall cell harvest and cell lysis efficiencies among … 0.5
mL of 0.25% trypsin/EDTA (Hyclone, Logan, Utah) was added and incubated with cell cultures

Global quantification of intact proteins via chemical isotope labeling and mass spectrometry

Z Liu, R Wang, J Liu, R Sun, F Wang - Journal of proteome …, 2019 - ACS Publications
Stable isotope labeling by amino acids in cell culture (SILAC) has been widely utilized in
bottom-up proteomics. (… same type of amino acids suffer from different local microenvironments, …

Chemical isotope labeling for quantitative proteomics

X Tian, HP Permentier, R Bischoff - Mass spectrometry reviews, 2023 - Wiley Online Library
label-based proteomics and on chemical labeling in particular, we give a brief introduction
of label-free proteomics in comparisonstable isotope labeling by amino acids in cell culture (…

Proteome scale-protein turnover analysis using high resolution mass spectrometric data from stable-isotope labeled plants

KT Fan, AK Rendahl, WP Chen… - Journal of proteome …, 2016 - ACS Publications
stable isotope labeled amino acids to label proteins for turnover experiments especially in cell
culture… that vary so that labeling ratios of the labeled atoms in different amino acids are not …

Isotopic labeling and quantitative proteomics of acetylation on histones and beyond

PJ Lund, Y Kori, X Zhao, S Sidoli, ZF Yuan… - Mass Spectrometry of …, 2019 - Springer
… By using heavy isotope labeling in cell culture combined with … (PTMs), which can bestow
different biophysical properties to … of amino acids or small molecules bearing stable isotopes, …

Quantitative proteomic and phosphoproteomic comparison of 2D and 3D colon cancer cell culture models

X Yue, JK Lukowski, EM Weaver… - Journal of proteome …, 2016 - ACS Publications
cell line can be grown as an adherent monolayer or as 1 mm spheroids. Using a stable isotope
labeling of amino acids (SILAC) labeling … phosphoprotein abundance differences in two …

Stable isotope N-phosphoryl amino acids labeling for quantitative profiling of amine-containing metabolites using liquid chromatography mass spectrometry

S Zhang, J Shi, C Shan, C Huang, Y Wu, R Ding… - Analytica Chimica …, 2017 - Elsevier
… of unavailable standards compounds with stable isotope labeling is usually one of the biggest
Based on different labeling chemistry, a number of stable isotope labeling reagents have …

Quantitative nascent proteome profiling by dual-pulse labelling with O-propargyl-puromycin and stable isotope-labelled amino acids

J Uchiyama, Y Ishihama, K Imami - The journal of biochemistry, 2021 - academic.oup.com
… -based proteomics can be used to monitor proteome dynamics. Pulse stable isotope labelling
by amino acids in cell culture (… To compare our proteomic result (asynchronous HeLa cells) …

Quantitative comparison of proteomes using SILAC

J Deng, H Erdjument‐Bromage… - Current protocols in …, 2019 - Wiley Online Library
Stable isotope labeling by amino acids in cell culture (SILAC) has become very popular as a
quantitative proteomic … metabolic labeling strategy in which isotope-labeled amino acids are …

An overview of advanced SILAC-labeling strategies for quantitative proteomics

F Terzi, S Cambridge - Methods in enzymology, 2017 - Elsevier
… dual-labeling experiments are straightforward in cell culture, it is … heavy amino acids followed
by in silico analyses of stable isotope … employed five different types of stable isotope labels. …