Emergence of dynamic properties in network hypermotifs

M Adler, R Medzhitov - … of the National Academy of Sciences, 2022 - National Acad Sciences
… To explore whether network motifs are joined in real networks in … different logic gates and
flip-flops, the three-node feedback loop … This mathematical model therefore provides a possible …

A robust molecular network motif for period-doubling devices

C Cuba Samaniego, E Franco - ACS synthetic biology, 2018 - ACS Publications
… gene networks and one on nucleic acid strand displacement … Our mathematical and
computational analysis suggests that … These interactions can be realized using an AND logic gate

From chemical soup to computing circuit: transforming a contiguous chemical medium into a logic gate network by modulating its external conditions

M Egbert, JS Gagnon… - Journal of the Royal …, 2019 - royalsocietypublishing.org
… implementing logic gates in a well-stirred chemical system that involves modifying the chemistry’s
… , more scalable route for creating chemistry-based logic gate networks and computers. …

Infochemistry and the future of chemical information processing

NV Ryzhkov, KG Nikolaev, AS Ivanov… - … Review of Chemical …, 2021 - annualreviews.org
Chemical logic gates by definition operate via Boolean logic (… Along with chemical logic
systems, biological logic networks … Tools based on Boolean logic, mathematical statistics, and …

DNA-based dynamic reaction networks

T Fu, Y Lyu, H Liu, R Peng, X Zhang, M Ye… - Trends in biochemical …, 2018 - cell.com
networks (RNs) are attractive for their high programmability, as well as cascading and fan-out
ability, which are similar to the basic principles of electronic logic gates. … complex chemical

Conclusions and Perspectives: Further Research Directions and Possible Applications

E Katz - DNA-and RNA-Based Computing Systems, 2020 - books.google.com
… stochastic chemical reaction networks (SCRNs) model 31 Turing machines 33 DNA keypad
locks 236–238 DNA logic circuits actuators 125 arithmetic full-adder, full-subtractor 234 half-…

[图书][B] An introduction to systems biology: design principles of biological circuits

U Alon - 2019 - api.taylorfrancis.com
… This book presents one path into systems biology based on mathematical principles, with …
networks are made of repeating occurrences of simple patterns called network motifs. Each …

Distributed biological computation: from oscillators, logic gates and switches to a multicellular processor and neural computing applications

M Moškon, R Komac, N Zimic, M Mraz - Neural Computing and …, 2021 - Springer
… , namely modules, systems, and networks. Modules present … form ring-like patterns based
on chemical gradients of an acyl-… biological systems is guided by mathematical models in the …

Propelling DNA computing with materials' power: Recent advancements in innovative DNA logic computing systems and smart bio‐applications

D Fan, J Wang, E Wang, S Dong - Advanced Science, 2020 - Wiley Online Library
logic devices can be classified into common logic gates, advanced logic devices for specific
arithmeticnetworks could realize high-level modulation of biomolecular information on cell …

Self-organizing materials built with DNA

FC Simmel, R Schulman - MRS Bulletin, 2017 - cambridge.org
… d’Arcy Wentworth Thompson applied mathematical and physical … synthetic-reaction networks
as chemical-control systems. Such … , logic gates,30,31 molecular classifiers,32 chemical con…