Mechanisms of bacterial transcription termination

JW Roberts - Journal of molecular biology, 2019 - Elsevier
… , derived principally from the Escherichia coli model (Fig. 1): … of sequence elements and
critical dimensions: It encodes an … substrates resulted in release of all transcripts. These results …

Mechanism of transcription initiation and promoter escape by E. coli RNA polymerase

KL Henderson, LC Felth, CM Molzahn… - Proceedings of the …, 2017 - National Acad Sciences
… from poly dAT, the rate of synthesis and release of 3-mer RNA (… RNA products are identified
by size and were quantified from … enzyme was performed as previously described using E. …

Backtracked and paused transcription initiation intermediate of Escherichia coli RNA polymerase

E Lerner, SY Chung, BL Allen… - Proceedings of the …, 2016 - National Acad Sciences
… (3, 4), release of short “abortive transcripts” and repositioning … enough strain is built in the
enzyme, the σ70 undergoes structural … quenched kinetics transcription assay that measures the …

Mechanisms of bacterial transcription termination: all good things must end

A Ray-Soni, MJ Bellecourt… - Annual review of …, 2016 - annualreviews.org
… strategically engineered into Escherichia coli or Thermus … proportional in size to the length
of the transcribed template, … the transcription bubble and driving RNA release and bubble …

Structures of E. coli σS-transcription initiation complexes provide new insights into polymerase mechanism

B Liu, Y Zuo, TA Steitz - Proceedings of the National …, 2016 - National Acad Sciences
… It is currently unknown how the release of pyrophosphate affects transcriptionenzyme with
purified σ S -his protein (about 1:3 molar ratio) at room temperature for 15 min followed by size

A novel RNA phosphorylation state enables 5′ end-dependent degradation in Escherichia coli

DJ Luciano, N Vasilyev, J Richards, A Serganov… - Molecular cell, 2017 - cell.com
… to further RNase E cleavage due to the preference of this enzyme for … These rate measurements
demonstrated that … treatment would release the cap from transcripts that had originally …

An NTP-driven mechanism for the nucleotide addition cycle of Escherichia coli RNA polymerase during transcription

RS Johnson, M Strausbauch, C McCloud - Plos one, 2022 - journals.plos.org
release curve as measured in a coupled enzyme reaction … due to the reaction catalyzed by
the enzyme in question [43]. … for pyrophosphate release may occur at termination sites and …

Model-based genome-wide determination of RNA chain elongation rates in Escherichia coli

P Großmann, A Lück, C Kaleta - Scientific Reports, 2017 - nature.com
measured along with free mRNA as the total mRNA level, n r . … Our model of transcription
speed is robust against violations … supercoiling is released by the ATP-dependent enzyme DNA …

Measurements of translation initiation from all 64 codons in E. coli

A Hecht, J Glasgow, PR Jaschke… - Nucleic acids …, 2017 - academic.oup.com
… Each expressed protein released peptides of intact N-termini that included an N-terminal …
We measured nanoluciferase expression under transcription control of the RhaP BAD …

Learning from the leaders: gene regulation by the transcription termination factor Rho

MA Kriner, A Sevostyanova, EA Groisman - Trends in biochemical sciences, 2016 - cell.com
… Instead of promoting constitutive transcription termination at the end of genes or operons,
regulated Rho-dependent terminators operate with tunable efficiency based on the presence …