Transcriptome-based identification and validation of reference genes for plant-bacteria interaction studies using Nicotiana benthamiana

MA Pombo, RN Ramos, Y Zheng, Z Fei, GB Martin… - Scientific Reports, 2019 - nature.com
… for robust gene expression analysis. We encourage employing these novel reference genes
in … and NbGADPH) and NbPP2a, a previously validated reference gene for virus-infected N. …

Selection and Validation of Reference Genes for RT-qPCR Analysis of Gene Expression in Nicotiana benthamiana upon Single Infections by 11 Positive-Sense …

G Zhang, Z Zhang, Q Wan, H Zhou, M Jiao, H Zheng… - Plants, 2023 - mdpi.com
… To analyze the differential expression of the 13 candidate reference genes in N. benthamiana
… Ct values of three biological replicates of each virus-infected group and the Mock infection …

[HTML][HTML] Validation of reference genes for quantifying changes in gene expression in virus-infected tobacco

E Baek, JY Yoon, P Palukaitis - Virology, 2017 - Elsevier
benthamiana infected by five viruses were quite different … expression, or the extent of variation
between experiments. Here we have validated several reference genes for use in tobacco

Transcriptome analysis of Nicotiana benthamiana infected by Tobacco curly shoot virus

K Li, G Wu, M Li, M Ma, J Du, M Sun, X Sun, L Qing - Virology journal, 2018 - Springer
… Differential gene expression analysis … To validate the RNA-seq data, 12 genes were
selected randomly for RT-qPCR … were found to be significantly regulated in virus-infected N. …

Transcriptional reprogramming caused by the geminivirus Tomato yellow leaf curl virus in local or systemic infections in Nicotiana benthamiana

M Wu, X Ding, X Fu, R Lozano-Duran - BMC genomics, 2019 - Springer
genes, which need to be reactivated in the virus-infected … The x-axis shows the log2
transformed gene expression fold … were validated by qPCR analysis of selected genes (Fig. 1c). …

Selection and validation of reference genes for gene expression studies using quantitative real-time PCR in prunus necrotic ringspot virus-infected Cucumis sativus

Z Dong, B Zhan, S Li - Viruses, 2022 - mdpi.com
… reliability of the reference genes. This study provides useful information for gene expression
analysis during PNRSV infection and will facilitate gene expression studies associated with …

Evaluation of reference genes for miRNA and mRNA normalization in tobacco infected with PVYNTN, PVYN-Wi and PVYZ-NTN strains

Z Yin, F Xie, K Michalak, Z Murawska, B Zhang… - Gene, 2023 - Elsevier
… have not been investigated in tobacco-PVY interaction either. This study aimed to identify
the most suitable reference genes for miRNA and mRNA expression analysis in tobacco

Reference genes for gene expression studies targeting sugarcane infected with Sugarcane mosaic virus (SCMV)

MF da Silva, MC Gonçalves, M dos Santos Brito… - BMC Research …, 2019 - Springer
… Among the si and mi samples indexed by RT-PCR respectively as virus infected and virus
… of reference genes is the validation by RT-qPCR analysis of a well-studied sugarcane gene

Validation of reference genes for quantifying changes in physiological gene expression in apple tree under cold stress and virus infection

JY Yoon, JH Jeong, SK Choi - Research in Plant Disease, 2020 - koreascience.kr
validate our findings, using two of the most stable and the one least stable validated reference
genes, one defense responsive gene … in virus-infected monocots using quantitative real-…

Reference gene selection for miRNA and mRNA normalization in potato in response to potato virus Y

Z Yin, F Xie, K Michalak, B Zhang… - Molecular and Cellular …, 2021 - Elsevier
… the stability and validate suitable reference genes under a given … Lower M value indicates
higher stability in gene expression. … and viral RNAs in the virus-infected plants are mainly the …