… CpG sites. We showed that the methyl-CpG-binding protein MBD2 preferentially binds to the
‘… Methylated CpG density was calculated as the number of CpG sites with methylation above …

… genomic features found that CpG density, H3K4me3 intensity … approximately 48% of CFP1
binding in open chromatin. This … : (1) binding of its ZF-CxxC domain to CpG dinucleotides; (2) …

… By definition, the methyl binding domain consists of about 70 residues and is the minimal
region required for binding to methylated DNA by a methyl-CpG-binding protein which binds …

… domain of MBD2 exhibits distinct dynamic DNA binding mode depending on CpG density
and methylation status. These results underscore the importance of understanding how DNA …

… binding proteins, including splicing factors, which suggests that demethylation of this particular
CpG … of CpGs, the density of transcription factor (TF) binding sites, and the presence of …

… the CpG density as a variable in DNA methylation analysis. … CpG density compared to a
procedure involving methylated DNA binding proteins (MBP) that is biased to higher density CpG …

… CGIs are regions of DNA with a high density of CpG dinucleotides (CpGs) present within
200–3,000 bp. The human genome contains ∼25,000 CGIs, most of which are sites of …

… can be applied to the simultaneous and genome-wide modified base detection systems
using microarrays coupled with modified base binding proteins fused to fluorescent proteins. …

… family members (MBD1–6 and methyl-CpG–binding protein 2 [MeCP2]), each of which … of
dense methylation of a CpG island, it should modify the ultimate positioning and density of the …

… We also compared the CAP binding for highly expressed c1-TSGs and c3-TSGs and found
that CAPs with higher tissue specificities have a higher tendency to bind to c3-TSGs (Fig S1C)…