[HTML][HTML] Profiling cell signaling networks at single-cell resolution

XK Lun, B Bodenmiller - Molecular & Cellular Proteomics, 2020 - ASBMB
… -cell signaling network profiling … network characterization using single-cell data and
discuss potential confounding factors that need to be considered in single-cell signaling network

eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks

DJB Clarke, MV Kuleshov, BM Schilder… - Nucleic acids …, 2018 - academic.oup.com
… the activity of cell signaling pathways is currently much more difficult. eXpression2Kinases
(X2K) computationally predicts involvement of upstream cell signaling pathways, given a …

The cancer stem-cell signaling network and resistance to therapy

A Carnero, Y Garcia-Mayea, C Mir, J Lorente… - Cancer treatment …, 2016 - Elsevier
… is the “cancer stem-cell (SC) model” … cells, the cancer-initiating cells (CICs) or cancer stem
cells (CSCs), as they will be referred to in this article [1]. This model implies a hierarchy of cells

Cell signaling as a cognitive process

A Koseska, PIH Bastiaens - The EMBO journal, 2017 - embopress.org
… the dynamics of signaling networks and how this information can be extracted experimentally.
We start by considering undirected protein interaction networks derived from proteomic …

Unraveling cell-to-cell signaling networks with chemical biology

ZJ Gartner, JA Prescher, LD Lavis - Nature Chemical Biology, 2017 - nature.com
networks of interacting cells. Given their centrality in cellular decision-making, cell-to-cell
signaling networks play … For example, cell-to-cell signaling is known to coordinate responses to …

[HTML][HTML] Computation and visualization of cellcell signaling topologies in single-cell systems data using Connectome

MSB Raredon, J Yang, J Garritano, M Wang… - Scientific Reports, 2022 - nature.com
… For demonstration, we explore the network topology of cellcell signaling based on
Vascular Endothelial Growth Factor A (Vegfa) over time. Figure 4B–D suggests that there is a …

Methods for the analysis of protein phosphorylation–mediated cellular signaling networks

FM White, A Wolf-Yadlin - Annual Review of Analytical Chemistry, 2016 - annualreviews.org
… a comprehensive understanding of signaling network function are daunting. The … cellular
signaling network need to be identified and their temporal response to different levels of cellular

How the T cell signaling network processes information to discriminate between self and agonist ligands

RS Ganti, WL Lo, DB McAffee… - Proceedings of the …, 2020 - National Acad Sciences
… problem as one where the T cell signaling network must discriminate between two inputs:
infected APCs that present a small number of agonist ligands (a bona fide signal) in a sea of …

[HTML][HTML] Conceptual evolution of cell signaling

A Nair, P Chauhan, B Saha, KF Kubatzky - International journal of …, 2019 - mdpi.com
Cellssignaling networks that relay extracellular cues into the cell, culminating in the
reprogramming of various biochemical, genetic, and structural processes. The cellular signaling

The cornerstone K-RAS mutation in pancreatic adenocarcinoma: From cell signaling network, target genes, biological processes to therapeutic targeting

N Jonckheere, R Vasseur, I Van Seuningen - Critical reviews in oncology …, 2017 - Elsevier
… K-RAS is central in cellular signaling network of pancreatic cancer cells. … As K-RAS mutations
control a wide array of cell signaling pathways (Fig. 2), it was expected that these mutations …