Profiling of short-tandem-repeat disease alleles in 12,632 human whole genomes
… Short tandem repeats are often polymorphic as a result of strand slippage during DNA
replication and are a common source of rare genetic diseases. … Additionally, STR mutations are …
replication and are a common source of rare genetic diseases. … Additionally, STR mutations are …
A genomic view of short tandem repeats
M Gymrek - Current opinion in genetics & development, 2017 - Elsevier
… and may contribute more de novo mutations than any other variant … to Mendelian diseases,
complex traits, and cancer. … de novo mutation based on predictions of the underlying mutation …
complex traits, and cancer. … de novo mutation based on predictions of the underlying mutation …
An update on the neurological short tandem repeat expansion disorders and the emergence of long-read sequencing diagnostics
SR Chintalaphani, SS Pineda, IW Deveson… - Acta Neuropathologica …, 2021 - Springer
… Short tandem repeat (STR) expansion disorders are an important cause of human neurological
disease… by other mutations such as missense and frameshift mutations. Interestingly, …
disease… by other mutations such as missense and frameshift mutations. Interestingly, …
Interpreting short tandem repeat variations in humans using mutational constraint
… reads and does not accurately describe large expansion mutations observed in conditions
such as Huntington's disease or fragile X syndrome. We show that our constraint metric can …
such as Huntington's disease or fragile X syndrome. We show that our constraint metric can …
Sequence composition changes in short tandem repeats: heterogeneity, detection, mechanisms and clinical implications
… The disease penetrance is also influenced by the repeat length in … disease, in which alleles
that are a few repeat copies short of the full mutation are associated with reduced disease …
that are a few repeat copies short of the full mutation are associated with reduced disease …
Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences
T Gall-Duncan, N Sato, RKC Yuen… - Genome …, 2022 - genome.cshlp.org
… of new repeat disease motifs, the focus of … disease mutation discovery and our understanding
of pathogenic mechanisms. We begin with a brief overview of the history of repeat disease …
of pathogenic mechanisms. We begin with a brief overview of the history of repeat disease …
Disease-associated short tandem repeats co-localize with chromatin domain boundaries
… Although daSTRs exhibit tremendous diversity in sequence, gene body location, and mutation-…
locations in the genome with increased susceptibility to STR instability in human disease. …
locations in the genome with increased susceptibility to STR instability in human disease. …
The Genomic landscape of short tandem repeats across multiple ancestries
P Vijayaraghavan, S Batalov, Y Ding, E Sanford… - Plos one, 2023 - journals.plos.org
… De Novo STR mutations Short Tandem Repeats are a common etiology of de novo
disease-causing mutations in people [13]. By better characterizing these de novo STRs, new …
disease-causing mutations in people [13]. By better characterizing these de novo STRs, new …
Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads
… In addition to short tandem repeat diseases, repeat copy … disease-causing mutations in
tandem repeat regions which have been overlooked by short read sequencing in human disease. …
tandem repeat regions which have been overlooked by short read sequencing in human disease. …
Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions
IS Rajan-Babu, JJ Peng, R Chiu… - Genome medicine, 2021 - Springer
… , FXN, or DMPK disease STR locus, or the spinocerebellar ataxia disease STR panel, our …
We performed clinical PCR tests on seven (out of 10) full-mutation samples identified by our …
We performed clinical PCR tests on seven (out of 10) full-mutation samples identified by our …