Profiling of short-tandem-repeat disease alleles in 12,632 human whole genomes

H Tang, EF Kirkness, C Lippert, WH Biggs… - The American Journal of …, 2017 - cell.com
Short tandem repeats are often polymorphic as a result of strand slippage during DNA
replication and are a common source of rare genetic diseases. … Additionally, STR mutations are …

A genomic view of short tandem repeats

M Gymrek - Current opinion in genetics & development, 2017 - Elsevier
… and may contribute more de novo mutations than any other variant … to Mendelian diseases,
complex traits, and cancer. … de novo mutation based on predictions of the underlying mutation

An update on the neurological short tandem repeat expansion disorders and the emergence of long-read sequencing diagnostics

SR Chintalaphani, SS Pineda, IW Deveson… - Acta Neuropathologica …, 2021 - Springer
Short tandem repeat (STR) expansion disorders are an important cause of human neurological
disease… by other mutations such as missense and frameshift mutations. Interestingly, …

Interpreting short tandem repeat variations in humans using mutational constraint

M Gymrek, T Willems, D Reich, Y Erlich - Nature genetics, 2017 - nature.com
… reads and does not accurately describe large expansion mutations observed in conditions
such as Huntington's disease or fragile X syndrome. We show that our constraint metric can …

Sequence composition changes in short tandem repeats: heterogeneity, detection, mechanisms and clinical implications

IS Rajan-Babu, E Dolzhenko, MA Eberle… - Nature Reviews …, 2024 - nature.com
… The disease penetrance is also influenced by the repeat length in … disease, in which alleles
that are a few repeat copies short of the full mutation are associated with reduced disease

Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences

T Gall-Duncan, N Sato, RKC Yuen… - Genome …, 2022 - genome.cshlp.org
… of new repeat disease motifs, the focus of … disease mutation discovery and our understanding
of pathogenic mechanisms. We begin with a brief overview of the history of repeat disease

Disease-associated short tandem repeats co-localize with chromatin domain boundaries

JH Sun, L Zhou, DJ Emerson, SA Phyo, KR Titus… - Cell, 2018 - cell.com
… Although daSTRs exhibit tremendous diversity in sequence, gene body location, and mutation-…
locations in the genome with increased susceptibility to STR instability in human disease. …

The Genomic landscape of short tandem repeats across multiple ancestries

P Vijayaraghavan, S Batalov, Y Ding, E Sanford… - Plos one, 2023 - journals.plos.org
… De Novo STR mutations Short Tandem Repeats are a common etiology of de novo
disease-causing mutations in people [13]. By better characterizing these de novo STRs, new …

Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads

S Mitsuhashi, MC Frith, T Mizuguchi, S Miyatake… - Genome biology, 2019 - Springer
… In addition to short tandem repeat diseases, repeat copy … disease-causing mutations in
tandem repeat regions which have been overlooked by short read sequencing in human disease. …

Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions

IS Rajan-Babu, JJ Peng, R Chiu… - Genome medicine, 2021 - Springer
… , FXN, or DMPK disease STR locus, or the spinocerebellar ataxia disease STR panel, our …
We performed clinical PCR tests on seven (out of 10) full-mutation samples identified by our …