RNA-Seq: revelation of the messengers
Next-generation RNA-sequencing (RNA-Seq) is rapidly outcompeting microarrays as the
technology of choice for whole-transcriptome studies. However, the bioinformatics skills …
technology of choice for whole-transcriptome studies. However, the bioinformatics skills …
[HTML][HTML] Catalyzing plant science research with RNA-seq
Next generation DNA sequencing technologies are driving increasingly rapid, affordable
and high resolution analyses of plant transcriptomes through sequencing of their associated …
and high resolution analyses of plant transcriptomes through sequencing of their associated …
Discovering new biology through sequencing of RNA
APM Weber - Plant physiology, 2015 - academic.oup.com
Abstract Sequencing of RNA (RNA-Seq) was invented approximately 1 decade ago and has
since revolutionized biological research. This update provides a brief historic perspective on …
since revolutionized biological research. This update provides a brief historic perspective on …
Designing a transcriptome next‐generation sequencing project for a nonmodel plant species1
SR Strickler, A Bombarely… - American journal of …, 2012 - Wiley Online Library
The application of next‐generation sequencing (NGS) to transcriptomics, commonly called
RNA‐seq, allows the nearly complete characterization of transcriptomic events occurring in …
RNA‐seq, allows the nearly complete characterization of transcriptomic events occurring in …
[HTML][HTML] A comprehensive online database for exploring∼ 20,000 public Arabidopsis RNA-seq libraries
In the last decade, RNA-sequencing (RNA-seq) has surpassed microarray to become the
gold standard for gene expression profiling due to the continuous drop in sequencing cost …
gold standard for gene expression profiling due to the continuous drop in sequencing cost …
RNA-Seq for transcriptome analysis in non-model plants
Sequencing of mRNA using next-generation sequencing (NGS) technologies (RNA-seq)
has the potential to reveal unprecedented complexity of the transcriptomes. The …
has the potential to reveal unprecedented complexity of the transcriptomes. The …
[HTML][HTML] Upcoming progress of transcriptomics studies on plants: An overview
P Tyagi, D Singh, S Mathur, A Singh… - Frontiers in Plant …, 2022 - frontiersin.org
Transcriptome sequencing or RNA-Sequencing is a high-resolution, sensitive and high-
throughput next-generation sequencing (NGS) approach used to study non-model plants …
throughput next-generation sequencing (NGS) approach used to study non-model plants …
An 'eFP‐Seq Browser'for visualizing and exploring RNA sequencing data
Improvements in next‐generation sequencing technologies have resulted in dramatically
reduced sequencing costs. This has led to an explosion of '‐seq'‐based methods, of which …
reduced sequencing costs. This has led to an explosion of '‐seq'‐based methods, of which …
[HTML][HTML] Optimization of an RNA-Seq differential gene expression analysis depending on biological replicate number and library size
S Lamarre, P Frasse, M Zouine, D Labourdette… - Frontiers in plant …, 2018 - frontiersin.org
RNA-Seq is a widely used technology that allows an efficient genome-wide quantification of
gene expressions for, for example, differential expression (DE) analysis. After a brief review …
gene expressions for, for example, differential expression (DE) analysis. After a brief review …
[HTML][HTML] The bench scientist's guide to statistical analysis of RNA-Seq data
CR Yendrek, EA Ainsworth, J Thimmapuram - BMC research notes, 2012 - Springer
Abstract Background RNA sequencing (RNA-Seq) is emerging as a highly accurate method
to quantify transcript abundance. However, analyses of the large data sets obtained by …
to quantify transcript abundance. However, analyses of the large data sets obtained by …