A review on recent advances in methods for site-directed spin labeling of long RNAs
K Huang, X Fang - International Journal of Biological Macromolecules, 2023 - Elsevier
RNAs are important biomolecules that play essential roles in various cellular processes and
are crucially linked with many human diseases. The key to elucidate the mechanisms …
are crucially linked with many human diseases. The key to elucidate the mechanisms …
Posttranscriptional site-directed spin labeling of large RNAs with an unnatural base pair system under non-denaturing conditions
Site-directed spin labeling (SDSL) of large RNAs for electron paramagnetic resonance
(EPR) spectroscopy has remained challenging to date. We here demonstrate an efficient …
(EPR) spectroscopy has remained challenging to date. We here demonstrate an efficient …
A versatile approach for site-directed spin labeling and structural EPR studies of RNAs
ES Babaylova, AV Ivanov, AA Malygin… - Organic & …, 2014 - pubs.rsc.org
Site-directed spin labeling (SDSL) is widely applied for structural studies of biopolymers by
electron paramagnetic resonance (EPR). However, SDSL of long RNA sequences still …
electron paramagnetic resonance (EPR). However, SDSL of long RNA sequences still …
A fully enzymatic method for site-directed spin labeling of long RNA
Site-directed spin labeling is emerging as an essential tool to investigate the structural and
dynamical features of RNA. We propose here an enzymatic method, which allows the …
dynamical features of RNA. We propose here an enzymatic method, which allows the …
Cut and paste RNA for nuclear magnetic resonance, paramagnetic resonance enhancement, and electron paramagnetic resonance structural studies
O Duss, ND dit Konté, FHT Allain - Methods in enzymology, 2015 - Elsevier
RNA is a crucial regulator involved in most molecular processes of life. Understanding its
function at the molecular level requires high-resolution structural information. However, the …
function at the molecular level requires high-resolution structural information. However, the …
Strategies for covalent labeling of long RNAs
H Depmeier, E Hoffmann, L Bornewasser… - …, 2021 - Wiley Online Library
The introduction of chemical modifications into long RNA molecules at specific positions for
visualization, biophysical investigations, diagnostic and therapeutic applications still …
visualization, biophysical investigations, diagnostic and therapeutic applications still …
Studying RNA using site-directed spin-labeling and continuous-wave electron paramagnetic resonance spectroscopy
In site-directed spin-labeling (SDSL), a stable nitroxide radical is attached to a specific
location within a macromolecule and electron paramagnetic resonance (EPR) spectroscopy …
location within a macromolecule and electron paramagnetic resonance (EPR) spectroscopy …
Noncovalent spin labeling of riboswitch RNAs to obtain long-range structural NMR restraints
C Helmling, I Bessi, A Wacker, KA Schnorr… - ACS Chemical …, 2014 - ACS Publications
Paramagnetic relaxation enhancement (PRE) NMR is a powerful method to study structure,
dynamics and function of proteins. Up to now, the application of PRE NMR on RNAs is a …
dynamics and function of proteins. Up to now, the application of PRE NMR on RNAs is a …
Site-Directed Spin Labeling of RNA with a Gem-Diethylisoindoline Spin Label: PELDOR, Relaxation, and Reduction Stability
C Wuebben, S Blume, D Abdullin, D Brajtenbach… - Molecules, 2019 - mdpi.com
Ribonucleic acid function is governed by its structure, dynamics, and interaction with other
biomolecules and influenced by the local environment. Thus, methods are needed that …
biomolecules and influenced by the local environment. Thus, methods are needed that …
A model system for investigating lineshape/structure correlations in RNA site-directed spin labeling
PZ Qin, J Iseri, A Oki - Biochemical and biophysical research …, 2006 - Elsevier
In RNA site-directed spin labeling (SDSL) studies, structural and dynamic information at the
individual RNA nucleotide level is derived from the observed electron paramagnetic …
individual RNA nucleotide level is derived from the observed electron paramagnetic …