[HTML][HTML] AK-score: accurate protein-ligand binding affinity prediction using an ensemble of 3D-convolutional neural networks
Accurate prediction of the binding affinity of a protein-ligand complex is essential for efficient
and successful rational drug design. Therefore, many binding affinity prediction methods …
and successful rational drug design. Therefore, many binding affinity prediction methods …
DLSSAffinity: protein–ligand binding affinity prediction via a deep learning model
H Wang, H Liu, S Ning, C Zeng, Y Zhao - Physical Chemistry Chemical …, 2022 - pubs.rsc.org
Evaluating the protein–ligand binding affinity is a substantial part of the computer-aided drug
discovery process. Most of the proposed computational methods predict protein–ligand …
discovery process. Most of the proposed computational methods predict protein–ligand …
[HTML][HTML] Binding affinity prediction for protein–ligand complex using deep attention mechanism based on intermolecular interactions
Background Accurate prediction of protein–ligand binding affinity is important for lowering
the overall cost of drug discovery in structure-based drug design. For accurate predictions …
the overall cost of drug discovery in structure-based drug design. For accurate predictions …
[HTML][HTML] Sfcnn: a novel scoring function based on 3D convolutional neural network for accurate and stable protein–ligand affinity prediction
Y Wang, Z Wei, L Xi - BMC bioinformatics, 2022 - Springer
Background Computer-aided drug design provides an effective method of identifying lead
compounds. However, success rates are significantly bottlenecked by the lack of accurate …
compounds. However, success rates are significantly bottlenecked by the lack of accurate …
Planet: a multi-objective graph neural network model for protein–ligand binding affinity prediction
X Zhang, H Gao, H Wang, Z Chen… - Journal of Chemical …, 2023 - ACS Publications
Predicting protein–ligand binding affinity is a central issue in drug design. Various deep
learning models have been published in recent years, where many of them rely on 3D …
learning models have been published in recent years, where many of them rely on 3D …
Onionnet: a multiple-layer intermolecular-contact-based convolutional neural network for protein–ligand binding affinity prediction
Computational drug discovery provides an efficient tool for helping large-scale lead
molecule screening. One of the major tasks of lead discovery is identifying molecules with …
molecule screening. One of the major tasks of lead discovery is identifying molecules with …
[HTML][HTML] A Cascade graph convolutional network for predicting protein–ligand binding affinity
Accurate prediction of binding affinity between protein and ligand is a very important step in
the field of drug discovery. Although there are many methods based on different …
the field of drug discovery. Although there are many methods based on different …
KDEEP: Protein–Ligand Absolute Binding Affinity Prediction via 3D-Convolutional Neural Networks
Accurately predicting protein–ligand binding affinities is an important problem in
computational chemistry since it can substantially accelerate drug discovery for virtual …
computational chemistry since it can substantially accelerate drug discovery for virtual …
[HTML][HTML] SE-OnionNet: a convolution neural network for protein–ligand binding affinity prediction
S Wang, D Liu, M Ding, Z Du, Y Zhong, T Song… - Frontiers in …, 2021 - frontiersin.org
Deep learning methods, which can predict the binding affinity of a drug–target protein
interaction, reduce the time and cost of drug discovery. In this study, we propose a novel …
interaction, reduce the time and cost of drug discovery. In this study, we propose a novel …
[HTML][HTML] Development of a graph convolutional neural network model for efficient prediction of protein-ligand binding affinities
J Son, D Kim - PloS one, 2021 - journals.plos.org
Prediction of protein-ligand interactions is a critical step during the initial phase of drug
discovery. We propose a novel deep-learning-based prediction model based on a graph …
discovery. We propose a novel deep-learning-based prediction model based on a graph …