Tripsacum De novo Transcriptome Assemblies Reveal Parallel Gene Evolution with Maize after Ancient Polyploidy

CM Gault, KA Kremling, ES Buckler - The Plant Genome, 2018 - Wiley Online Library
Plant genomes reduce in size following a whole‐genome duplication event, and one gene
in a duplicate gene pair can lose function in absence of selective pressure to maintain …

[HTML][HTML] Repetitive sequence analysis and karyotyping reveal different genome evolution and speciation of diploid and tetraploid Tripsacum dactyloides

Q Zhu, Z Cai, Q Tang, W Jin - The Crop Journal, 2016 - Elsevier
Abstract In the subtribe Maydeae, Tripsacum and Zea are closely related genera. Tripsacum
is a horticultural crop widely used as pasture forage. Previous studies suggested that …

Parallel natural selection in the cold-adapted crop-wild relative Tripsacum dactyloides and artificial selection in temperate adapted maize

L Yan, SK Kenchanmane Raju, X Lai, Y Zhang, X Dai… - BioRxiv, 2017 - biorxiv.org
The direct progenitor of maize, teosinte, is indigenous to a relatively small range of tropical
and sub-tropical latitudes. In contrast, domesticated maize thrives in temperate climates …

[HTML][HTML] A high-quality, phased genome assembly of broomcorn millet reveals the features of its subgenome evolution and 3D chromatin organization

Z Wang, S Huang, Z Yang, J Lai, X Gao, J Shi - Plant Communications, 2023 - cell.com
Grasses of the genus Panicum grow in natural and agricultural ecosystems worldwide and
include about 450 species distributed throughout tropical and temperate regions. Most …

[HTML][HTML] Megabase-scale presence-absence variation with Tripsacum origin was under selection during maize domestication and adaptation

Y Huang, W Huang, Z Meng, GT Braz, Y Li, K Wang… - Genome biology, 2021 - Springer
Abstract Background Structural variants (SVs) significantly drive genome diversity and
environmental adaptation for diverse species. Unlike the prevalent small SVs (< kilobase …

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

MC Luo, YQ Gu, FM You, KR Deal… - Proceedings of the …, 2013 - National Acad Sciences
The current limitations in genome sequencing technology require the construction of
physical maps for high-quality draft sequences of large plant genomes, such as that of …

[PDF][PDF] Comparative genomics with maize and other grasses: from genes to genomes!

JC Schnable, E Lyons - Maydica, 2011 - schnablelab.org
On February 28th, 2008 at the Smithsonian National Museum of Natural History, while
dining on sushi under the watchful gaze of Henry, the 8-ton 14-foot-tall African elephant on …

[HTML][HTML] Unfashionable crop species flourish in the 21st century

W Powell, P Langridge - Genome Biology, 2004 - Springer
Genome-level studies are contributing to a major renaissance in crop science. In wheat,
there are now more than 500,000 expressed sequence tags, and these are being used in …

Gene loss and movement in the maize genome

J Lai, J Ma, Z Swigoňová, W Ramakrishna… - Genome …, 2004 - genome.cshlp.org
Maize (Zea mays L. ssp. mays), one of the most important agricultural crops in the world,
originated by hybridization of two closely related progenitors. To investigate the fate of its …

Genome sequence and analysis of the tuber crop potato

X Xu, P Pan, S Cheng, B Zhang, D Mu, P Ni, G Zhang… - 2011 - cgspace.cgiar.org
Potato (Solanum tuberosum L.) is the world's most important non-grain food crop and is
central to global food security. It is clonally propagated, highly heterozygous, autotetraploid …