Collapse transitions of proteins and the interplay among backbone, sidechain, and solvent interactions

AS Holehouse, RV Pappu - Annual Review of biophysics, 2018 - annualreviews.org
Proteins can collapse into compact globules or form expanded, solvent-accessible, coil-like
conformations. Additionally, they can fold into well-defined three-dimensional structures or …

Backbone-driven collapse in unfolded protein chains

DP Teufel, CM Johnson, JK Lum… - Journal of molecular …, 2011 - Elsevier
Collapse of unfolded protein chains is an early event in folding. It affects structural properties
of intrinsically disordered proteins, which take a considerable fraction of the human …

How, when and why proteins collapse: the relation to folding

G Haran - Current opinion in structural biology, 2012 - Elsevier
Unfolded proteins under strongly denaturing conditions are highly expanded. However,
when the conditions are more close to native, an unfolded protein may collapse to a …

Dissecting entropic coiling and poor solvent effects in protein collapse

F Grater, P Heider, R Zangi… - Journal of the American …, 2008 - ACS Publications
The early events in protein collapse and folding are guided by the protein's elasticity. The
contributions of entropic coiling and poor solvent effects like hydrophobic forces to the …

Size and sequence and the volume change of protein folding

JB Rouget, T Aksel, J Roche, JL Saldana… - Journal of the …, 2011 - ACS Publications
The application of hydrostatic pressure generally leads to protein unfolding, implying, in
accordance with Le Chatelier's principle, that the unfolded state has a smaller molar volume …

A backbone-based theory of protein folding

GD Rose, PJ Fleming, JR Banavar… - Proceedings of the …, 2006 - National Acad Sciences
Under physiological conditions, a protein undergoes a spontaneous disorder⇌ order
transition called “folding.” The protein polymer is highly flexible when unfolded but adopts its …

[PDF][PDF] Unfolding of a small protein proceeds via dry and wet globules and a solvated transition state

SS Sarkar, JB Udgaonkar, G Krishnamoorthy - Biophysical journal, 2013 - cell.com
Dissecting a protein unfolding process into individual steps can provide valuable information
on the forces that maintain the integrity of the folded structure. Solvation of the protein core …

Role of solvation effects in protein denaturation: from thermodynamics to single molecules and back

JL England, G Haran - Annual review of physical chemistry, 2011 - annualreviews.org
Protein stability often is studied in vitro through the use of urea and guanidinium chloride,
chemical cosolvents that disrupt protein native structure. Much controversy still surrounds …

Polypeptide chain collapse and protein folding

JB Udgaonkar - Archives of biochemistry and biophysics, 2013 - Elsevier
Polypeptide chain collapse is an integral component of a protein folding reaction. In this
review, experimental characterization of the interplay of polypeptide chain collapse …

Chemical probes and engineered constructs reveal a detailed unfolding mechanism for a solvent-free multidomain protein

JD Eschweiler, RM Martini… - Journal of the American …, 2017 - ACS Publications
Despite the growing application of gas-phase measurements in structural biology and drug
discovery, the factors that govern protein stabilities and structures in a solvent-free …