Structural Prediction of Peptide–MHC Binding Modes
MAS Perez, MA Cuendet, UF Röhrig… - … Science: Methods and …, 2022 - Springer
The immune system is constantly protecting its host from the invasion of pathogens and the
development of cancer cells. The specific CD8+ T-cell immune response against virus …
development of cancer cells. The specific CD8+ T-cell immune response against virus …
Structure-based methods for binding mode and binding affinity prediction for peptide-MHC complexes
Understanding the mechanisms involved in the activation of an immune response is
essential to many fields in human health, including vaccine development and personalized …
essential to many fields in human health, including vaccine development and personalized …
A practical guide to structure-based prediction of MHC-binding peptides
S Ranganathan, JC Tong - Immunoinformatics: Predicting Immunogenicity …, 2007 - Springer
The binding of bound peptide ligands to major histocompatibility complex (MHC) molecules
plays a key role in the activation of normal immune responses and is an intricate theoretical …
plays a key role in the activation of normal immune responses and is an intricate theoretical …
[HTML][HTML] General prediction of peptide-MHC binding modes using incremental docking: a proof of concept
The class I major histocompatibility complex (MHC) is capable of binding peptides derived
from intracellular proteins and displaying them at the cell surface. The recognition of these …
from intracellular proteins and displaying them at the cell surface. The recognition of these …
[HTML][HTML] Towards universal structure-based prediction of class II MHC epitopes for diverse allotypes
AJ Bordner - PLoS One, 2010 - journals.plos.org
The binding of peptide fragments of antigens to class II MHC proteins is a crucial step in
initiating a helper T cell immune response. The discovery of these peptide epitopes is …
initiating a helper T cell immune response. The discovery of these peptide epitopes is …
[HTML][HTML] Accurate modeling of peptide-MHC structures with AlphaFold
V Mikhaylov, CA Brambley, GLJ Keller, AG Arbuiso… - Structure, 2024 - cell.com
Major histocompatibility complex (MHC) proteins present peptides on the cell surface for T
cell surveillance. Reliable in silico prediction of which peptides would be presented and …
cell surveillance. Reliable in silico prediction of which peptides would be presented and …
GradDock: rapid simulation and tailored ranking functions for peptide-MHC Class I docking
HH Kyeong, Y Choi, HS Kim - Bioinformatics, 2018 - academic.oup.com
Motivation The identification of T-cell epitopes has many profound translational applications
in the areas of transplantation, disease diagnosis, vaccine/therapeutic protein development …
in the areas of transplantation, disease diagnosis, vaccine/therapeutic protein development …
Predicting TCR-peptide recognition based on residue-level pairwise statistical potential
VK Karnaukhov, DS Shcherbinin, AO Chugunov… - bioRxiv, 2022 - biorxiv.org
T cell receptor (TCR) recognition of foreign peptides presented by major histocompatibility
complex (MHC) proteins is a crucial step in triggering the adaptive immune response …
complex (MHC) proteins is a crucial step in triggering the adaptive immune response …
[HTML][HTML] Physicochemical heuristics for identifying high fidelity, near-native structural models of Peptide/MHC complexes
GLJ Keller, LI Weiss, BM Baker - Frontiers in Immunology, 2022 - frontiersin.org
There is long-standing interest in accurately modeling the structural features of peptides
bound and presented by class I MHC proteins. This interest has grown with the advent of …
bound and presented by class I MHC proteins. This interest has grown with the advent of …
APE-Gen2. 0: Expanding Rapid Class I Peptide–Major Histocompatibility Complex Modeling to Post-Translational Modifications and Noncanonical Peptide …
The recognition of peptides bound to class I major histocompatibility complex (MHC-I)
receptors by T-cell receptors (TCRs) is a determinant of triggering the adaptive immune …
receptors by T-cell receptors (TCRs) is a determinant of triggering the adaptive immune …