Genetic algorithm with a crossover elitist preservation mechanism for protein–ligand docking

B Guan, C Zhang, J Ning - Amb Express, 2017 - Springer
Protein–ligand docking plays an important role in computer-aided pharmaceutical
development. Protein–ligand docking can be defined as a search algorithm with a scoring …

HIGA: a running history information guided genetic algorithm for protein–ligand docking

B Guan, C Zhang, Y Zhao - Molecules, 2017 - mdpi.com
Protein-ligand docking is an essential part of computer-aided drug design, and it identifies
the binding patterns of proteins and ligands by computer simulation. Though Lamarckian …

EDGA: a population evolution direction-guided genetic algorithm for protein–ligand docking

B Guan, C Zhang, J Ning - Journal of Computational Biology, 2016 - liebertpub.com
Protein–ligand docking can be formulated as a search algorithm associated with an
accurate scoring function. However, most current search algorithms cannot show good …

An efficient ABC_DE_based hybrid algorithm for protein–ligand docking

B Guan, C Zhang, Y Zhao - International journal of molecular sciences, 2018 - mdpi.com
Protein–ligand docking is a process of searching for the optimal binding conformation
between the receptor and the ligand. Automated docking plays an important role in drug …

A comparison of various optimization algorithms of protein–ligand docking programs by fitness accuracy

L Guo, Z Yan, X Zheng, L Hu, Y Yang… - Journal of molecular …, 2014 - Springer
In protein–ligand docking, an optimization algorithm is used to find the best binding pose of
a ligand against a protein target. This algorithm plays a vital role in determining the docking …

Efficient protein-ligand docking using sustainable evolutionary algorithm

E Atilgan, J Hu - Proceedings of the 12th annual conference on Genetic …, 2010 - dl.acm.org
AutoDock is a widely used automated protein docking program in structure-based drug-
design. Different search algorithms, such as Simulated Annealing, traditional Genetic …

Random drift particle swarm optimisation algorithm for highly flexible protein-ligand docking

Y Fu, Z Chen, J Sun - Journal of theoretical biology, 2018 - Elsevier
Molecular docking has emerged as an important tool in drug design and development.
Currently, there is a relatively large and ever-increasing number of molecular docking …

PSOVina: The hybrid particle swarm optimization algorithm for protein–ligand docking

MCK Ng, S Fong, SWI Siu - Journal of bioinformatics and …, 2015 - World Scientific
Protein–ligand docking is an essential step in modern drug discovery process. The
challenge here is to accurately predict and efficiently optimize the position and orientation of …

SODOCK: Swarm optimization for highly flexible protein–ligand docking

HM Chen, BF Liu, HL Huang… - Journal of …, 2007 - Wiley Online Library
Protein–ligand docking can be formulated as a parameter optimization problem associated
with an accurate scoring function, which aims to identify the translation, orientation, and …

A hybrid cuckoo search and differential evolution approach to protein–ligand docking

H Lin, SWI Siu - International Journal of Molecular Sciences, 2018 - mdpi.com
Protein–ligand docking is a molecular modeling technique that is used to predict the
conformation of a small molecular ligand at the binding pocket of a protein receptor. There …