HGVS recommendations for the description of sequence variants: 2016 update

JT Den Dunnen, R Dalgleish, DR Maglott… - Human …, 2016 - Wiley Online Library
The consistent and unambiguous description of sequence variants is essential to report and
exchange information on the analysis of a genome. In particular, DNA diagnostics critically …

VariantValidator: Accurate validation, mapping, and formatting of sequence variation descriptions

PJ Freeman, RK Hart, LJ Gretton, AJ Brookes… - Human …, 2018 - Wiley Online Library
Abstract The Human Genome Variation Society (HGVS) variant nomenclature is widely used
to describe sequence variants in scientific publications, clinical reports, and databases …

Improving sequence variant descriptions in mutation databases and literature using the Mutalyzer sequence variation nomenclature checker

M Wildeman, E Van Ophuizen, JT Den Dunnen… - Human …, 2008 - Wiley Online Library
Unambiguous and correct sequence variant descriptions are of utmost importance, not in the
least since mistakes and uncertainties may lead to undesired errors in clinical diagnosis. We …

Mutalyzer 2: next generation HGVS nomenclature checker

M Lefter, JK Vis, M Vermaat, JT den Dunnen… - …, 2021 - academic.oup.com
Motivation Unambiguous variant descriptions are of utmost importance in clinical genetic
diagnostics, scientific literature and genetic databases. The Human Genome Variation …

ClinVar: public archive of interpretations of clinically relevant variants

MJ Landrum, JM Lee, M Benson, G Brown… - Nucleic acids …, 2016 - academic.oup.com
Abstract ClinVar (https://www. ncbi. nlm. nih. gov/clinvar/) at the National Center for
Biotechnology Information (NCBI) is a freely available archive for interpretations of clinical …

Locus Reference Genomic sequences: an improved basis for describing human DNA variants

R Dalgleish, P Flicek, F Cunningham, A Astashyn… - Genome medicine, 2010 - Springer
As our knowledge of the complexity of gene architecture grows, and we increase our
understanding of the subtleties of gene expression, the process of accurately describing …

VarFish: comprehensive DNA variant analysis for diagnostics and research

M Holtgrewe, O Stolpe, M Nieminen… - Nucleic acids …, 2020 - academic.oup.com
VarFish is a user-friendly web application for the quality control, filtering, prioritization,
analysis, and user-based annotation of DNA variant data with a focus on rare disease …

A standard variation file format for human genome sequences

MG Reese, B Moore, C Batchelor, F Salas… - Genome biology, 2010 - Springer
Here we describe the Genome Variation Format (GVF) and the 10Gen dataset. GVF, an
extension of Generic Feature Format version 3 (GFF3), is a simple tab-delimited format for …

ClinGen variant curation expert panel experiences and standardized processes for disease and gene‐level specification of the ACMG/AMP guidelines for sequence …

EA Rivera‐Muñoz, LV Milko, SM Harrison… - Human …, 2018 - Wiley Online Library
Genome‐scale sequencing creates vast amounts of genomic data, increasing the challenge
of clinical sequence variant interpretation. The demand for high‐quality interpretation …

[HTML][HTML] InterVar: clinical interpretation of genetic variants by the 2015 ACMG-AMP guidelines

Q Li, K Wang - The American Journal of Human Genetics, 2017 - cell.com
In 2015, the American College of Medical Genetics and Genomics (ACMG) and the
Association for Molecular Pathology (AMP) published updated standards and guidelines for …